| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 606,506 – 606,609 |
| Length | 103 |
| Max. P | 0.514129 |
| Location | 606,506 – 606,609 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 80.28 |
| Mean single sequence MFE | -20.21 |
| Consensus MFE | -12.76 |
| Energy contribution | -13.15 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 606506 103 - 22407834 --GCCUUUCUCUUUCCCACACCUGCA----------ACUUGCAGCACCACAAAUUUGAAAUGAAAUAUUUUCGAUUCUGCUGUCAACAUGAGUUUUGUUGACAACACAUUAGCAA --((.................((((.----------....))))..........((((((........))))))...((.((((((((.......)))))))).)).....)).. ( -18.60) >DroVir_CAF1 47955 101 - 1 --CUCUCUCUCUCUCGCACAUUUUCU---------CACAC---GCAGCGCAAAUUUGAAAUGAAAUAUUUUCGAUGCUGCUGUCAACGCGAGUUCUGUUGACAACACAUUAGCAA --.............((.........---------.....---((((((.....((((((........))))))))))))((((((((.(....)))))))))........)).. ( -22.50) >DroEre_CAF1 38379 113 - 1 --GCCUUUCUCUUUCCCACACCUGCACCUGCAACCAACUUGCAGCACCACAAAUUUGAAAUGAAAUAUUUUCGAUUCUGCUGUCAACAUGAGUUUUGUUGACAACACAUUAGCAA --((...................(((.((((((.....))))))..........((((((........))))))...)))((((((((.......))))))))........)).. ( -21.90) >DroYak_CAF1 38397 110 - 1 --GCCUUUCUCUUUCCCACACCUGCAACUU---GCCACUUGCAGCACCACAAAUUUGAAAUGAAAUAUUUUCGAUUCUGCUGUCAACAUGAGUUUUGUUGACAACACAUUAGCAA --((.................((((((...---.....))))))..........((((((........))))))...((.((((((((.......)))))))).)).....)).. ( -20.00) >DroMoj_CAF1 46985 98 - 1 -----CCUCUCGCUCGCACACUUUCU---------CACAC---GCAGCGCAAAUUUGAAAUGAAAUAUUUUCGAUUCUGCUGUCAGCGCGAGUUCUGUUGACAACACAUUAGCAA -----......(((.((.........---------.....---)))))(((...((((((........))))))...)))((((((((.(....)))))))))............ ( -19.04) >DroAna_CAF1 37218 100 - 1 GCGCCUUUCUCUUUCCCACACCUGCC---------------CAGCAGCCCAAAUUUGAAAUGAAAUAUUUUCGAUUCUGCUGUCAACAUUGGUUUGGCCGACAAGACAUUAGCAG ..((.....(((((((((.(((....---------------..(((((......((((((........))))))....))))).......))).)))..)).)))).....)).. ( -19.22) >consensus __GCCUUUCUCUUUCCCACACCUGCA_________CACUU_CAGCACCACAAAUUUGAAAUGAAAUAUUUUCGAUUCUGCUGUCAACAUGAGUUUUGUUGACAACACAUUAGCAA ...........................................((.........((((((........))))))...((.((((((((.......)))))))).)).....)).. (-12.76 = -13.15 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:10 2006