Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,455,239 – 5,455,330 |
Length | 91 |
Max. P | 0.514167 |
Location | 5,455,239 – 5,455,330 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 79.90 |
Mean single sequence MFE | -23.15 |
Consensus MFE | -15.34 |
Energy contribution | -14.95 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.12 |
Mean z-score | -1.24 |
Structure conservation index | 0.66 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5455239 91 - 22407834 UGGACGUGCGUGCAUUUA-ACUGCCGCCAGAAGCCAGAGUUUAAAUGGCUUCGUUGCAUUUAGCUUCGUUAUCGAAUUGUAAUGAA--UUCAUA ..((((.(((.(((....-..))))))).(((((((.........))))))))))((.....))((((((((......))))))))--...... ( -24.50) >DroPse_CAF1 89314 87 - 1 U--GGUUGCGUGCC-----ACUGGAGACAGAAGCCAGCGGCUAAAUGGCUUCGUUGCAUUUAGUUUCGUUUUCGAUACUUAAUGAAUAUUCACA .--....(((.(((-----((((....))).((((...))))...))))..)))..((((.(((.(((....))).))).)))).......... ( -24.30) >DroEre_CAF1 75717 91 - 1 CGGACCUGCGUGCAUUUAAACGGCCGCCAGAAGCCAGAGU-UAAAUGGCUUCGUUGCAUUUAGCUUCGUUAUCGAAUUGUAAUGAA--UUCAUA ((((.(((.(((((.......((...)).(((((((....-....)))))))..))))).))).)))).....(((((......))--)))... ( -24.60) >DroYak_CAF1 82323 92 - 1 GGGACUUGCGUGCAUUUAAACAGCCGCCAGAAGCCAGAGUUUAAAUGGCUUCGUUGCAUUUAGCUUCGUUAUCGAAUUGUAAUGAA--UUCAUA (.(((..(((.((.........)))))..(((((((.........)))))))))).).......((((((((......))))))))--...... ( -23.00) >DroAna_CAF1 78937 87 - 1 UAAGCUUGCGUGCA-----ACUAUCGACAGAAGCCGGAGACUAAAUGGCUUCACUGCAUUUAGCUUCGUUUUCGAUAUUUAAUGAA--UUCACA ...((......)).-----..((((((...((((.((((.(((((((.(......)))))))))))))))))))))).........--...... ( -19.20) >DroPer_CAF1 89998 87 - 1 C--GGUUGCGUGCC-----ACUGGAGACAGAAGCCAGCGGGUAAAUGGCUUCGUUGCAUUUAGUUUCGUUUUCGAUACUUAAUGAAUAUUCACA .--(((.....)))-----..((....))(((((((.........)))))))(((.((((.(((.(((....))).))).)))))))....... ( -23.30) >consensus UGGACUUGCGUGCA_____ACUGCCGACAGAAGCCAGAGUCUAAAUGGCUUCGUUGCAUUUAGCUUCGUUAUCGAAAUGUAAUGAA__UUCACA .........(((.................(((((((.........)))))))....((((.....(((....))).....))))......))). (-15.34 = -14.95 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:09 2006