Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,453,420 – 5,453,511 |
Length | 91 |
Max. P | 0.591708 |
Location | 5,453,420 – 5,453,511 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.67 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -22.23 |
Energy contribution | -22.87 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.09 |
Mean z-score | -1.95 |
Structure conservation index | 0.76 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5453420 91 - 22407834 C-GGAAACACGCCCGAUUCCACGGUGACA-------GUAAA-G----UAGAUGAGCGAGUUGGCCAGGCCAAUUUCAACUUUGGCGACAACAAGUCACGCCAAC .-(....).((((((......)))..((.-------.....-)----)......))).((((((...(((((........)))))(((.....)))..)))))) ( -24.80) >DroSec_CAF1 72859 90 - 1 U-GGAAACACGGUCGAUUCCACGGUGACA-------GUAUA-G----UGGAUGAGCGAGUUGGCCAGGCCAAUUUCAACUUUGGCGACAACAAGUCACGCCAA- (-(....))((.(((..(((((.(((...-------.))).-)----))))))).))..(((((...(((((........)))))(((.....)))..)))))- ( -28.20) >DroSim_CAF1 83945 90 - 1 C-GGAAACACGCUCGAUUCAACGGUGACA-------GUAUA-G----UGGAUGAGCGAGUUGGCCAGGCCAAUUUCAACUUUGGCGACAACAAGUCACGCCAA- .-(....).(((((.((((((((....).-------))...-.----))))))))))..(((((...(((((........)))))(((.....)))..)))))- ( -29.30) >DroEre_CAF1 73879 92 - 1 C-GGAAACGCGCUCGAUUCCACGGUGACA-------CUAUAUG----AGCAUGAGCGAGUUGGCCAGGCCAAUUUCAACUUUGGCGACAACAAGUCACGCCAAC (-(....))((((((.......(....).-------(.....)----....)))))).((((((...(((((........)))))(((.....)))..)))))) ( -29.40) >DroYak_CAF1 80423 86 - 1 C-GGAAACACGCUCGAUGCCACGGUGACA-------GUA----------CAUGAGCGAGUUGGCCAGGCCAAUUUCAACUUUGGCGACAACAAGUCACGCCAAC .-(....).(((((.(((..(((....).-------)).----------)))))))).((((((...(((((........)))))(((.....)))..)))))) ( -31.30) >DroAna_CAF1 77228 103 - 1 CAGGAAACACGCCCGAUAUAUGGCAUAUACUUGUAUGUGUA-GGAAAGGUAUGGGCGAGUUGGCCAGGCCAAUUUCAACUUUGGCGACAACAAGUCACGACAAC ..(....).(((((.((((...(((((((....))))))).-......))))))))).((((.....(((((........)))))(((.....))).))))... ( -32.80) >consensus C_GGAAACACGCUCGAUUCCACGGUGACA_______GUAUA_G____UGGAUGAGCGAGUUGGCCAGGCCAAUUUCAACUUUGGCGACAACAAGUCACGCCAAC ..(....).((((((......)(....)........................))))).((((((...(((((........)))))(((.....)))..)))))) (-22.23 = -22.87 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:06 2006