Locus 2012

Sequence ID 2L_DroMel_CAF1
Location 5,452,174 – 5,452,264
Length 90
Max. P 0.638510
window3239

overview

Window 9

Location 5,452,174 – 5,452,264
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 80.99
Mean single sequence MFE -16.95
Consensus MFE -11.57
Energy contribution -11.57
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.50
Structure conservation index 0.68
SVM decision value 0.22
SVM RNA-class probability 0.638510
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5452174 90 + 22407834
CCUUGGAUUUUCCCCUGA-UUUUCCUCGUUACUUACAACAACUACAUGCCAGUGUCAACACAUACUUGGCCAUUCAAGUGGGC----AACCCC-AA
.(((((((..........-........(((......)))........((((((((......)))).)))).)))))))((((.----...)))-). ( -16.70)
>DroPse_CAF1 85461 96 + 1
UGCUGCUCCUUCUCCGGUGUUGCCAUCGUUACUUACAACAACUACAUGCCAGUGUCAACACAUACUUGGCCAUUCAAGUGGGCCAAAAACCCCAAA
.((.((.((......)).)).))........................(((.(((....))).(((((((....))))))))))............. ( -17.30)
>DroEre_CAF1 72677 87 + 1
---UGGCUUUUCCCCUGA-UUUUCCUCGUUACUUACAACAACUACAUGCCAGUGUCAACACAUACUUGGCCAUUCAAGUGGGC----AACCCC-AA
---(((............-........(((......))).......((((.(((....))).(((((((....))))))))))----)...))-). ( -15.80)
>DroWil_CAF1 103494 74 + 1
----------------GA-CUGCCAUCGUUACUUACAACAACUACAUGCCAGUGUCAACACAUACUUGGCCAUUCAAGUGGGC----AACGGC-AA
----------------..-.((((...(((......))).......((((.(((....))).(((((((....))))))))))----)..)))-). ( -20.60)
>DroAna_CAF1 76005 79 + 1
---UC------UCUCU---GUGCCAUCGUUACUUACAACAACUACAUGCCAGUGUCAACACAUACUUGGCCAUUCAAGUGGGC----AACCCC-AA
---..------.....---...........................((((.(((....))).(((((((....))))))))))----).....-.. ( -14.00)
>DroPer_CAF1 85108 96 + 1
UGCUGCUCCUUCUCCGGUGUUGCCAUCGUUACUUACAACAACUACAUGCCAGUGUCAACACAUACUUGGCCAUUCAAGUGGGCCAAAAACCCCAAA
.((.((.((......)).)).))........................(((.(((....))).(((((((....))))))))))............. ( -17.30)
>consensus
___UG____UUCCCCUGA_UUGCCAUCGUUACUUACAACAACUACAUGCCAGUGUCAACACAUACUUGGCCAUUCAAGUGGGC____AACCCC_AA
...............................................(((.(((....))).(((((((....))))))))))............. (-11.57 = -11.57 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:05 2006