Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,452,008 – 5,452,117 |
Length | 109 |
Max. P | 0.822264 |
Location | 5,452,008 – 5,452,117 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.90 |
Mean single sequence MFE | -31.95 |
Consensus MFE | -27.73 |
Energy contribution | -28.07 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.87 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.822264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5452008 109 + 22407834 -----------UCGGGAAAAUGUGAGGAAAAUAAAUGAAAAUGCUCCAGAGCUCGUUCACAAGAGUGCUUACGGCAUCCGCAAGGAGCUGUUGAAGUGGCAAAUUUGCGCAGAGCGACGC -----------..........(((.(((..((........))..)))...((((...(.((((..((((.(((((.(((....))))))))......))))..)))).)..))))..))) ( -29.60) >DroVir_CAF1 105319 107 + 1 -----------GAGCCAAAAUGUGCGGAAAAUAAAUGAAAAUGCU-CAAAGCUCGUUCACAACGGUGCUUACGGCGUCCGCAAGGAGCUGUUGAAGUGGCAAAUUUGCGCA-AGCGACAC -----------..((((..................((((...((.-....))...))))(((((((((.....)).(((....))))))))))...))))....((((...-.))))... ( -32.60) >DroGri_CAF1 111169 107 + 1 -----------GAGCCAAAAUGUGCGGAAAAUAAAUGAAAAUGCU-CAAAGCUCGUUCACAACGGUGCUUACGGCGUCCGCAAGGAGCUGUUGAAGUGGCAAAUUUGCGCA-AGCGACAC -----------..((((..................((((...((.-....))...))))(((((((((.....)).(((....))))))))))...))))....((((...-.))))... ( -32.60) >DroWil_CAF1 103290 107 + 1 -----------UUGAGAAAAUGUGCGGAAAAUAAAUGAAAAUGCU-CAAAGCUCGUUCACAAGAGUGCUUACGGCAUCCGCAAGGAGCUGUUGAAGUGGCAAAUUUGCGCA-AGCGACGC -----------............(((...............((((-....((((........))))(((((((((.(((....))))))))..))))))))...((((...-.))))))) ( -31.20) >DroMoj_CAF1 116527 107 + 1 -----------GAGCCAAAAUGUGCGGAAAAUAAAUGAAAAUGCU-CAAAGCUCGUUCACAACGGUGCUUACGGCGUCCGCAAGGAGCUGUUGAAGUGGCAAAUUUGCGCA-AGCGACAC -----------..((((..................((((...((.-....))...))))(((((((((.....)).(((....))))))))))...))))....((((...-.))))... ( -32.60) >DroAna_CAF1 75837 119 + 1 CCAAAGCGAAGCUGGAAAAAUGUGAGGAAAAUAAAUGAAAAUGCU-CAGAGCUCGUUCACAAGAGUGCUUACGGCAUCCGCAAGGAGCUGUUGAAGUGGCAAAUUUGCGCAGAGCGUCGC .....((((...........(.((((.(.............).))-)).)((((...(.((((..((((.(((((.(((....))))))))......))))..)))).)..)))).)))) ( -33.12) >consensus ___________GAGCCAAAAUGUGCGGAAAAUAAAUGAAAAUGCU_CAAAGCUCGUUCACAACAGUGCUUACGGCAUCCGCAAGGAGCUGUUGAAGUGGCAAAUUUGCGCA_AGCGACAC ....................((((((((.......((((...(((....)))...))))......((((.(((((.(((....))))))))......))))..))))))))......... (-27.73 = -28.07 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:05 2006