| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,444,630 – 5,444,737 |
| Length | 107 |
| Max. P | 0.778896 |
| Location | 5,444,630 – 5,444,737 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 92.55 |
| Mean single sequence MFE | -26.32 |
| Consensus MFE | -22.74 |
| Energy contribution | -22.77 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5444630 107 - 22407834 GCCGUCGACGUUGGCAUGUAAACAAAUCGAUUUGUUUCAUUGAUGACAUUCUUGGCGAGAUU-UUUGCAAAAUGUCAUAAAGUUUAUGACUUAAGUCUUUUGUUUGGC--- ((((.......))))...((((((((..((((((..((((..((((((((....(((((...-)))))..)))))))).......))))..)))))).))))))))..--- ( -27.70) >DroPse_CAF1 74686 107 - 1 GACAGAGACGUUGGCAUGUAAACAAAUCGAUUUGUUUCAUUGAUGACAUUCUUGGCGAGAUU-UUUGCAAAAUGUCAUAAAGUUUAUGACUUAAGUCUUUUGUUUGAC--- (((((((((...((((((.(((((((....))))))).....((((((((....(((((...-)))))..))))))))......)))).))...))).))))))....--- ( -23.50) >DroEre_CAF1 65107 107 - 1 GCCGUCGACGUUGGCAUGUAAACAAAUCGAUUUGUUUCAUUGAUGACAUUCUUGGCGAGAUU-UUUGCAAAAUGUCAUAAAGUUUAUGACUUAAGUCUUUUGUUUGCC--- ((((.......))))..(((((((((..((((((..((((..((((((((....(((((...-)))))..)))))))).......))))..)))))).))))))))).--- ( -30.50) >DroWil_CAF1 92551 110 - 1 GGCUGUGUAGAUGGCAUGUAAACAAAUCGAUUUGUUUCAUUGAUGACAUUCUUGCCGAGAUU-CUUGCCAAAUGUCAUAAAGUUUAUGACUUAAGUCUUUUGUUUGGGAUG .(((((....))))).(.((((((((..((((((..((((..((((((((..((.((((...-)))).)))))))))).......))))..)))))).)))))))).)... ( -25.70) >DroAna_CAF1 68500 108 - 1 GUUGGAGAAGCUGGCAUGUAAACAAAUCGAUUUGUUUCAUUGAUGACAUUCUUGGCGAGAUUUUUUGCAAAAUGUCAUAAAGUUUAUGACUUAAGUCUUUUGUUUGGC--- ((..(.....)..))...((((((((..((((((..((((..((((((((....(((((....)))))..)))))))).......))))..)))))).))))))))..--- ( -27.00) >DroPer_CAF1 74281 107 - 1 GACAGAGACGUUGGCAUGUAAACAAAUCGAUUUGUUUCAUUGAUGACAUUCUUGGCGAGAUU-UUUGCAAAAUGUCAUAAAGUUUAUGACUUAAGUCUUUUGUUUGAC--- (((((((((...((((((.(((((((....))))))).....((((((((....(((((...-)))))..))))))))......)))).))...))).))))))....--- ( -23.50) >consensus GACGGAGACGUUGGCAUGUAAACAAAUCGAUUUGUUUCAUUGAUGACAUUCUUGGCGAGAUU_UUUGCAAAAUGUCAUAAAGUUUAUGACUUAAGUCUUUUGUUUGGC___ ..................((((((((..((((((..((((..((((((((....(((((....)))))..)))))))).......))))..)))))).))))))))..... (-22.74 = -22.77 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:00 2006