Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,434,541 – 5,434,637 |
Length | 96 |
Max. P | 0.579152 |
Location | 5,434,541 – 5,434,637 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.34 |
Mean single sequence MFE | -26.45 |
Consensus MFE | -18.65 |
Energy contribution | -18.85 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.18 |
Mean z-score | -1.02 |
Structure conservation index | 0.71 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5434541 96 - 22407834 -UAUCGAUUGCCCGCCAUAAAAUCGAUCAUUAGCGCUGUUAAUUUGCAGCAACAAAGAGUGUGGC-----GCGUUGAUGGCAACGCUUCAACAGUU-C-------CAGUU -....(((((...((((((...(((........)(((((......)))))......)).))))))-----((((((....)))))).....)))))-.-------..... ( -26.00) >DroVir_CAF1 79442 87 - 1 UUAUCGAUUG----CUAUAAAAUCGAUCAUUAACGCUGUUAAUUUGCUGCGCC-CCGC-----GA-----GCGUUGAUGGCAACGCAUCGACAGCU-GAG-----CAA-- ..(((((((.----......))))))).......((((((........(((..-.)))-----((-----((((((....)))))).)))))))).-...-----...-- ( -25.30) >DroPse_CAF1 63690 102 - 1 CUAUCGAUUGGCCGCUAUAAAAUCGAUCAUUAACGCUGUUAAUUUGCUGCGACAAAGCGCACGGCGCGUCGCGUUGAUGGCAACGCUUCAACAGUU-C-------CGUUC ..(((((((...........))))))).......((((((.....((.(((((...((((...)))))))))((((....))))))...)))))).-.-------..... ( -26.90) >DroGri_CAF1 85628 99 - 1 CUAUCGAUUG----CUAUAAAAUCGAUCAUUAACGCUGUUAAUUUGCGACGCU-CAGCUUUGGGA-----GCGUUGAUGGCAACGCACCGACAGUU-AAGUUAAGCAGUU ..(((((((.----......))))))).((((((...))))))((((...(((-.((((((((..-----((((((....)))))).)))).))))-.)))...)))).. ( -28.10) >DroAna_CAF1 58834 96 - 1 -UAUCGAUUGC-CGCUAUAAAAUCGAUCAUUAGCGCUGUUAAUUUGCAGCGACAAAGAGCGUAGC-----GCGUUGAUGGCAACGCUUCAACAGUUUC-------UGGUU -........((-(((((......((.((.((..((((((......))))))..)).)).))))))-----((((((....))))))............-------.))). ( -25.50) >DroPer_CAF1 63351 102 - 1 CUAUCGAUUGGCCGCUAUAAAAUCGAUCAUUAACGCUGUUAAUUUGCUGCGACAAAGCGCACGGCGCGUCGCGUUGAUGGCAACGCUUCAACAGUU-C-------CGUUC ..(((((((...........))))))).......((((((.....((.(((((...((((...)))))))))((((....))))))...)))))).-.-------..... ( -26.90) >consensus CUAUCGAUUG__CGCUAUAAAAUCGAUCAUUAACGCUGUUAAUUUGCUGCGACAAAGCGCACGGC_____GCGUUGAUGGCAACGCUUCAACAGUU_C_______CAGUU ..(((((((...........))))))).......((((((........(((......)))..........((((((....))))))...))))))............... (-18.65 = -18.85 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:55 2006