Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,434,137 – 5,434,240 |
Length | 103 |
Max. P | 0.773463 |
Location | 5,434,137 – 5,434,240 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 95.99 |
Mean single sequence MFE | -36.37 |
Consensus MFE | -32.26 |
Energy contribution | -33.48 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.41 |
Structure conservation index | 0.89 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5434137 103 + 22407834 CGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUUCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAUUAUCGACCCGCGGCGAACUGUGCUA .(((((....(((((.....)))))...)))))..((((.((((.((((((.......(((.(((....))).)))..)))))).)))))))).......... ( -38.70) >DroSec_CAF1 53751 103 + 1 CGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUUCGGUGUCAUUCAGCCAAUCGAUCGAUCCGCAUUAUCGACCCGCUGCGAACUGUGCUA .(((((....(((((.....)))))...)))))(((((((((((.((((((.......((..(((....)))..))..)))))).))))))......))))). ( -35.40) >DroSim_CAF1 64700 103 + 1 CGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUUCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAUUAUCGACCCGCUGCGAACUGUGCUA .(((((....(((((.....)))))...)))))(((((((((((.((((((.......(((.(((....))).)))..)))))).))))))......))))). ( -39.40) >DroEre_CAF1 54675 103 + 1 CGUCUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUCCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAUUAUCGACCCGCUGCGAACUGUGCUA .(.(((....(((((.....)))))...))).)(((((((((((..(((((.......(((.(((....))).)))..)))))..))))))......))))). ( -34.20) >DroYak_CAF1 60756 102 + 1 CGUCUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUGCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAU-AUCGACCCGCUGCGAACUGUGCUA .(.(((....(((((.....)))))...))).)(((((((((((..((((((......(((.(((....))).)))))-))))..))))))......))))). ( -35.70) >DroAna_CAF1 58478 101 + 1 AGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAG--GUUCGGUGUCAUUCAGUCAAUCGAUUGAUCGACAUUAUCGACCCGCUGCGAACUGUGCUA .(((((....(((((.....)))))...)))))(((((..(--((((((((((..((((((....))))))..))))).............))))))))))). ( -34.81) >consensus CGACUAUGAAGUGACAAAAGGUCGCGCUUGGUCAGCGCCAGCGGUUCGGUGUCAUUCAGCCAAUCGAUCGAUCGGCAUUAUCGACCCGCUGCGAACUGUGCUA .(((((....(((((.....)))))...)))))(((((((((((.((((((.......(((.(((....))).)))..)))))).))))))......))))). (-32.26 = -33.48 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:54 2006