| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,424,197 – 5,424,301 |
| Length | 104 |
| Max. P | 0.735210 |
| Location | 5,424,197 – 5,424,301 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.39 |
| Mean single sequence MFE | -26.35 |
| Consensus MFE | -15.25 |
| Energy contribution | -15.58 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.735210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5424197 104 + 22407834 CCGCACCACCAACACCA-CCCCGCCUG-AUUGC---CAACACAUUGGAAAUGUCAAAUUUAGCUGACAAUUAAUAAAUUAU-GCGAACGGAGCGCUUAAAUGGCGCCAGU .................-((.(((.((-(((.(---(((....))))...(((((........))))).......))))).-)))...)).(((((.....))))).... ( -21.00) >DroPse_CAF1 52742 101 + 1 ---CAUCGGUCGCGGCCC-CCCUUCUC-AUUGC---CAACACAUUGGAAAUGUCAAAUUUAGUUGACAAUUAAUAAAUUAU-GCGAACGGGGCGCUUAAGUGGCGCCAGA ---.....((((((((((-((.(((.(-((..(---(((....))))...((((((......))))))...........))-).))).)))).)))...)))))...... ( -28.70) >DroGri_CAF1 71141 103 + 1 ---CUCUG-CCCCAACUCUCCUGCUCC-GCUGCCAGCAACACAUUG-AAAUGUCAAAUUUAGUUGACAAUUCAUAAAUUAUUGCU-GCUGGGCGCUUAAAUGGCGCCACU ---.....-.............((...-...))((((((.....((-((.((((((......)))))).)))).......)))))-)...((((((.....))))))... ( -27.50) >DroWil_CAF1 65841 99 + 1 ---C-CUAUUCGUACUC-CCCCUCUUGUAUGGC---CGACACAUUG-AAAUGUCAAAUUUAGUUGACAAUUAAUAAAUUAU-GCC-ACUGGGCGCUUAAAUGGCGCCAAA ---.-......((((..-........))))(((---......((((-(..((((((......)))))).))))).......-)))-....((((((.....))))))... ( -21.82) >DroAna_CAF1 46529 96 + 1 ---CA-----GCCACCG-CCCCGCCUG-AUUGC---CAACACAUUGGAAAUGUCAAAUUUAGUUGACAAUUAAUAAAUUAU-GGCAACGGGGCGCUUAAAUGGCGCCAGA ---..-----((((.((-(((((....-.((((---((.........((.((((((......)))))).)).........)-))))))))))))......))))...... ( -31.07) >DroPer_CAF1 52358 102 + 1 ---CAUCGGUCGGGGCCCCCCCUUCUC-AUUGC---CAACACAUUGGAAAUGUCAAAUUUAGUUGACAAUUAAUAAAUUAU-GCGAACGGGGCGCUUAAGUGGCGCCAGA ---..(((...((((...))))(((.(-((..(---(((....))))...((((((......))))))...........))-).))))))((((((.....))))))... ( -28.00) >consensus ___CACCG_UCGCACCC_CCCCGCCUC_AUUGC___CAACACAUUGGAAAUGUCAAAUUUAGUUGACAAUUAAUAAAUUAU_GCGAACGGGGCGCUUAAAUGGCGCCAGA ..................................................((((((......))))))......................((((((.....))))))... (-15.25 = -15.58 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:51 2006