Locus 200

Sequence ID 2L_DroMel_CAF1
Location 602,089 – 602,198
Length 109
Max. P 0.998703
window299 window300

overview

Window 9

Location 602,089 – 602,198
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 94.77
Mean single sequence MFE -40.52
Consensus MFE -35.96
Energy contribution -36.40
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -2.31
Structure conservation index 0.89
SVM decision value 3.19
SVM RNA-class probability 0.998703
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 602089 109 + 22407834
UUGGCUUGGAUCUGGAUUUCGGUCCGAUCCGGCUUGGCUUCUGCUCUGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUCUGAACCAGAGUUUUGAAGUCAGUCG
.......(((((.((((....)))))))))((((.((((((.(((((((.((((.((((.((...((.....)))).))))...)))))))))))...)))))))))). ( -42.30)
>DroSec_CAF1 33459 105 + 1
UUGGCUUGGAUCUGGAUUUUGGCCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGC----AAGGUCUGAACCAGAGUUUUGAAGUCAGUCG
.......(((((.((.......)).)))))((((.((((((.((((.((.((((((((((((.........)))----))))).)))))).))))...)))))))))). ( -38.10)
>DroSim_CAF1 31858 109 + 1
UUGGCUUGGAUCUGGAUUUUGGCCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUCUGAACCAGAGUUUUGAAGUCACUCG
.((((((.(((((((.(((.((((...((((((..(((...(((...((......))..)))...)))....))))))..)))).))))))))...)).)))))).... ( -37.10)
>DroEre_CAF1 33937 109 + 1
UUGGCUUGGAUCUGGAUUUGGACCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUUUGAACCGGAGUUUCGAAGUCAGUCG
.......(((((.((.......)).)))))((((.((((((.(((((((.(((((....((.(((.(((......))))))))))))))))))))...)))))))))). ( -42.20)
>DroYak_CAF1 33715 109 + 1
UUGGCUUGGAUCUGGAUUUUGACCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUUUGAACCGGAGUUUUGAAGUCAGUCG
.......(((((.((.......)).)))))((((.((((((.(((((((.(((((....((.(((.(((......))))))))))))))))))))...)))))))))). ( -42.90)
>consensus
UUGGCUUGGAUCUGGAUUUUGGCCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUCUGAACCAGAGUUUUGAAGUCAGUCG
..((((.(((((.((........)))))))))))(((((((.(((((((.(((((((((.(((.........))..).))))).)))))))))))...))))))).... (-35.96 = -36.40 +   0.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 602,089 – 602,198
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 94.77
Mean single sequence MFE -32.02
Consensus MFE -29.62
Energy contribution -29.42
Covariance contribution -0.20
Combinations/Pair 1.12
Mean z-score -1.93
Structure conservation index 0.93
SVM decision value 2.87
SVM RNA-class probability 0.997470
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 602089 109 - 22407834
CGACUGACUUCAAAACUCUGGUUCAGACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCAGAGCAGAAGCCAAGCCGGAUCGGACCGAAAUCCAGAUCCAAGCCAA
.(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).((((((((......))).)))))....... ( -31.70)
>DroSec_CAF1 33459 105 - 1
CGACUGACUUCAAAACUCUGGUUCAGACCUU----GCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGCCAAAAUCCAGAUCCAAGCCAA
.(..((.((((....((((((((..(((.((----((...........)))).)))..))))))))..)))).))..).((((((((......))).)))))....... ( -29.70)
>DroSim_CAF1 31858 109 - 1
CGAGUGACUUCAAAACUCUGGUUCAGACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGCCAAAAUCCAGAUCCAAGCCAA
.(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).((((((((......))).)))))....... ( -31.20)
>DroEre_CAF1 33937 109 - 1
CGACUGACUUCGAAACUCCGGUUCAAACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGUCCAAAUCCAGAUCCAAGCCAA
.(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).(((((((((....)))).)))))....... ( -34.30)
>DroYak_CAF1 33715 109 - 1
CGACUGACUUCAAAACUCCGGUUCAAACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGUCAAAAUCCAGAUCCAAGCCAA
.(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).(((((((((....)))).)))))....... ( -33.20)
>consensus
CGACUGACUUCAAAACUCUGGUUCAGACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGCCAAAAUCCAGAUCCAAGCCAA
.(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).((((((((......))).)))))....... (-29.62 = -29.42 +  -0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:06 2006