Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 602,089 – 602,198 |
Length | 109 |
Max. P | 0.998703 |
Location | 602,089 – 602,198 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 94.77 |
Mean single sequence MFE | -40.52 |
Consensus MFE | -35.96 |
Energy contribution | -36.40 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -2.31 |
Structure conservation index | 0.89 |
SVM decision value | 3.19 |
SVM RNA-class probability | 0.998703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 602089 109 + 22407834 UUGGCUUGGAUCUGGAUUUCGGUCCGAUCCGGCUUGGCUUCUGCUCUGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUCUGAACCAGAGUUUUGAAGUCAGUCG .......(((((.((((....)))))))))((((.((((((.(((((((.((((.((((.((...((.....)))).))))...)))))))))))...)))))))))). ( -42.30) >DroSec_CAF1 33459 105 + 1 UUGGCUUGGAUCUGGAUUUUGGCCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGC----AAGGUCUGAACCAGAGUUUUGAAGUCAGUCG .......(((((.((.......)).)))))((((.((((((.((((.((.((((((((((((.........)))----))))).)))))).))))...)))))))))). ( -38.10) >DroSim_CAF1 31858 109 + 1 UUGGCUUGGAUCUGGAUUUUGGCCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUCUGAACCAGAGUUUUGAAGUCACUCG .((((((.(((((((.(((.((((...((((((..(((...(((...((......))..)))...)))....))))))..)))).))))))))...)).)))))).... ( -37.10) >DroEre_CAF1 33937 109 + 1 UUGGCUUGGAUCUGGAUUUGGACCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUUUGAACCGGAGUUUCGAAGUCAGUCG .......(((((.((.......)).)))))((((.((((((.(((((((.(((((....((.(((.(((......))))))))))))))))))))...)))))))))). ( -42.20) >DroYak_CAF1 33715 109 + 1 UUGGCUUGGAUCUGGAUUUUGACCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUUUGAACCGGAGUUUUGAAGUCAGUCG .......(((((.((.......)).)))))((((.((((((.(((((((.(((((....((.(((.(((......))))))))))))))))))))...)))))))))). ( -42.90) >consensus UUGGCUUGGAUCUGGAUUUUGGCCCGAUCCGGCUUGGCUUCUGCUCCGGCUUUAACUUUGCGCUUGCCCUUUGCCGGGAAGGUCUGAACCAGAGUUUUGAAGUCAGUCG ..((((.(((((.((........)))))))))))(((((((.(((((((.(((((((((.(((.........))..).))))).)))))))))))...))))))).... (-35.96 = -36.40 + 0.44)
Location | 602,089 – 602,198 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 94.77 |
Mean single sequence MFE | -32.02 |
Consensus MFE | -29.62 |
Energy contribution | -29.42 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -1.93 |
Structure conservation index | 0.93 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 602089 109 - 22407834 CGACUGACUUCAAAACUCUGGUUCAGACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCAGAGCAGAAGCCAAGCCGGAUCGGACCGAAAUCCAGAUCCAAGCCAA .(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).((((((((......))).)))))....... ( -31.70) >DroSec_CAF1 33459 105 - 1 CGACUGACUUCAAAACUCUGGUUCAGACCUU----GCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGCCAAAAUCCAGAUCCAAGCCAA .(..((.((((....((((((((..(((.((----((...........)))).)))..))))))))..)))).))..).((((((((......))).)))))....... ( -29.70) >DroSim_CAF1 31858 109 - 1 CGAGUGACUUCAAAACUCUGGUUCAGACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGCCAAAAUCCAGAUCCAAGCCAA .(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).((((((((......))).)))))....... ( -31.20) >DroEre_CAF1 33937 109 - 1 CGACUGACUUCGAAACUCCGGUUCAAACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGUCCAAAUCCAGAUCCAAGCCAA .(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).(((((((((....)))).)))))....... ( -34.30) >DroYak_CAF1 33715 109 - 1 CGACUGACUUCAAAACUCCGGUUCAAACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGUCAAAAUCCAGAUCCAAGCCAA .(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).(((((((((....)))).)))))....... ( -33.20) >consensus CGACUGACUUCAAAACUCUGGUUCAGACCUUCCCGGCAAAGGGCAAGCGCAAAGUUAAAGCCGGAGCAGAAGCCAAGCCGGAUCGGGCCAAAAUCCAGAUCCAAGCCAA .(..((.((((....((((((((..(((((((((......))).)))......)))..))))))))..)))).))..).((((((((......))).)))))....... (-29.62 = -29.42 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:06 2006