Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 81,304 – 81,396 |
Length | 92 |
Max. P | 0.985753 |
Location | 81,304 – 81,396 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 88.91 |
Mean single sequence MFE | -26.58 |
Consensus MFE | -22.48 |
Energy contribution | -21.90 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.14 |
Mean z-score | -3.24 |
Structure conservation index | 0.85 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985753 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 81304 92 - 22407834 UUAAAGUCGUCUAAAAAUACCACAAACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC- .....(((((((.........((((....)))).((((.(((.....))).))))))))))).......((((((((((...))))))))))- ( -29.40) >DroPse_CAF1 71642 93 - 1 UAAAUAUCGUCUAAAAAUACCAAUUCCAACUGUAGUUGCUGUUUUAACCCAUAGCAGACGUCAAAUAUUGUCGCACCUGUCGCAGGUGUGGCC ..((((((((((...............(((....)))(((((........))))))))))....)))))((((((((((...)))))))))). ( -24.40) >DroSim_CAF1 56237 92 - 1 UUAAAGUCGUCUAAAAAUACCACAUACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC- .....(((((((.........(((......))).((((.(((.....))).))))))))))).......((((((((((...))))))))))- ( -29.50) >DroEre_CAF1 60674 92 - 1 UUAAAGUCGUCUAAAAAUACCACAUACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC- .....(((((((.........(((......))).((((.(((.....))).))))))))))).......((((((((((...))))))))))- ( -29.50) >DroYak_CAF1 54016 91 - 1 UUA-AGCCGUCUAAAAAUACCACACACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC- ...-.(((((((.........(((......))).((((.(((.....))).))))))))((((.....))))(((((((...))))))))))- ( -23.80) >DroPer_CAF1 72650 92 - 1 UAAAUAUUGUCUAA-AAUACCCAUUCCAACUGUAGUUGCUGUUUUAACCCAUAGCAGACGUCAAAUAUUGUCGCACCUGUCGCAGGUGUGGCC ........((((..-............(((....)))(((((........)))))))))..........((((((((((...)))))))))). ( -22.90) >consensus UUAAAGUCGUCUAAAAAUACCACAUACAAUUGUAGUUGCAGCUUUAAGUUAUAGCAGACGACAAAUAUUGUCGCACCUGUCACAGGUGUGGC_ .......(((((..............((((....))))..(((.........)))))))).........((((((((((...)))))))))). (-22.48 = -21.90 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:26 2006