Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 12,872 – 12,982 |
Length | 110 |
Max. P | 0.980333 |
Location | 12,872 – 12,982 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.30 |
Mean single sequence MFE | -24.89 |
Consensus MFE | -17.27 |
Energy contribution | -16.92 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.26 |
Mean z-score | -2.18 |
Structure conservation index | 0.69 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12872 110 + 22407834 AACCGAGACUGUACUGGCAUUUGUUGCUGACCACAAAGUUGGCGACGUUAUGUUGACUGAAAAUGUAAAAAUUAUACAACAAAUUAGAUGUACAUAUACAGAACACCAAA---------- ........(((((...(((((((((((..((......))..)))))....(((((.....................)))))....)))))).....))))).........---------- ( -22.10) >DroSec_CAF1 1102 106 + 1 AACCGAGACGGUACUGGCAUUUGUUGCUGACCAUAAGGUUGGCGACGUUAUGUUGACUGAAAAUGUAAAAAUUAUACAACAAAUUAGAUGU----AUACAAGCCAACAAA---------- .((((...))))..((((....(((((..(((....)))..))))).(((((((.......)))))))....((((((.(......).)))----)))...)))).....---------- ( -28.50) >DroSim_CAF1 1102 106 + 1 AACCGAGACGGUACUGGCAUUUGUUGCUGACCAUAAGGUUGGCGACGUUAUGUUGACUGAAAAUGUAAAAAUUAUACAACAAAUUAGAUGU----AUACACAACAACAAA---------- ........((((...(((((.((((((..(((....)))..))))))..))))).))))....(((......((((((.(......).)))----))).......)))..---------- ( -25.62) >DroEre_CAF1 1435 106 + 1 AACUGAGACGGUACUGGCAUUUGUUGCUGACCAUAAAGUUGGUGACGUAAUGUUGACUGAAAAUGUACAAGUUUUAUAACAAAUUAGAUGU----ACAUUUUUUAAUAAA---------- ........((((...(((((((((..(..((......))..)..))).)))))).))))((((((((((...((((........)))))))----)))))))........---------- ( -25.90) >DroYak_CAF1 1092 116 + 1 AACCGAAACGGUACUGGCAUUUGUUGCUGACCACAAAGUUGGCGACGUUAUGUUCACUGAAAAUUUACAAGAUAUACGACAAAUAAGAUUU----AAAUGCUGUAACAAACUGUAAGUAU .......(((((((.((((((((((((..((......))..)))))((..(((...((...........))..)))..))...........----))))))))).....)))))...... ( -22.30) >DroPer_CAF1 7891 103 + 1 AACAGAAACGGUACUAGCGUUUGUAGCUGACCACAAAGUCGGCGAUGUUAUGUUGACUGAAAAU-----AAAUAUUCAAUUAAUUAA-UG----------UCGAAAUGUAUUGUUA-UAU ......((((((((...........((((((......))))))(((((((.(((((.((((...-----.....)))).))))))))-))----------)).....)))))))).-... ( -24.90) >consensus AACCGAGACGGUACUGGCAUUUGUUGCUGACCACAAAGUUGGCGACGUUAUGUUGACUGAAAAUGUAAAAAUUAUACAACAAAUUAGAUGU____AUACACAACAACAAA__________ ........((((...(((((.((((((((((......))))))))))..))))).))))............................................................. (-17.27 = -16.92 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:22:57 2006