| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,415,582 – 5,415,690 |
| Length | 108 |
| Max. P | 0.565131 |
| Location | 5,415,582 – 5,415,690 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.75 |
| Mean single sequence MFE | -53.03 |
| Consensus MFE | -31.41 |
| Energy contribution | -32.72 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5415582 108 + 22407834 ---GCCCCCCACCUCAGCGCCUUUCAGCUGGGAAUGUGGCAGCAGCAGUGGCCCCAACUCACCGCCGGAUUCCUGGCCAGCGCCAAUCAGCAGGCGGCCUUG---------GCCUUGGCA ---(((..((((((((((........))))))...)))).....((...((((((........(((((....)))))..((........)).)).))))...---------))...))). ( -40.90) >DroPse_CAF1 42298 117 + 1 ---GCCUCGCACCUCAGCGCCUUCCAGCUGGGGAUGUGGCAGCAGCAGUGGCCCCAGCUGACGGCCGGGUUCCUGGCCAGUGCCAAUCAACAGGCGGCCUUUGCAGCAGCCGCCGCGGCA ---(((.((..(((((((........)))))))..(((((.((.((((.((((.........((((((....))))))...(((........))))))).)))).)).))))))).))). ( -60.80) >DroWil_CAF1 50438 108 + 1 ---GGCCCACAUCUGAGUGCAUUUCAGCUGGGCAUGUGGCAACAACAAUGGCCCCAGUUGACUGCCGGUUUCCUGGCCAGCGCCAAUCAGCAGGCUGCAUUU---------GCCGCAGCA ---.(((((...(((((.....))))).))))).((((((((......(((((..((..(((.....)))..)))))))(((((........))).))..))---------))))))... ( -42.70) >DroMoj_CAF1 58893 120 + 1 CCGAGCGCCUCGCUGGGCGCCUUUCAGCUGGGCAUGUGGCAGCAGCAGUGGCCGCAGCUAACGGCCGGCUUUCUGGCCAGCGCCAAUCAGCAAGCGGCCUUCGCCGCUGCAGCGGCGGCA ......((((((((((((((.....((((((((.....((....))....))).)))))...((((((....)))))).)))))........((((((....)))))).)))))).))). ( -61.80) >DroAna_CAF1 38325 108 + 1 ---GCCCCGCCCCUGAGCGCCUUUCAGCUGGGCAUGUGGCAGCAGCAGUGGCCCCAGCUCACGGCCGGAUUCUUGGCCAGCGCCAACCAGCAGGCGGCCCUG---------GCCUUGGCA ---((((((.((.(((((((((.......)))).((.(((.((....)).))).))))))).)).)))......((((((.(((..((....)).))).)))---------)))..))). ( -51.20) >DroPer_CAF1 41988 117 + 1 ---GCCUCGCACCUCAGCGCCUUCCAGCUGGGGAUGUGGCAGCAGCAGUGGCCCCAGCUGACGGCCGGGUUCCUGGCCAGUGCCAAUCAACAGGCGGCCUUUGCAGCAGCCGCCGCGGCA ---(((.((..(((((((........)))))))..(((((.((.((((.((((.........((((((....))))))...(((........))))))).)))).)).))))))).))). ( -60.80) >consensus ___GCCCCGCACCUCAGCGCCUUUCAGCUGGGCAUGUGGCAGCAGCAGUGGCCCCAGCUGACGGCCGGAUUCCUGGCCAGCGCCAAUCAGCAGGCGGCCUUU_________GCCGCGGCA ...(((..........((((.....(((((((...((.((.......)).)))))))))...((((((....)))))).))))..........(((((.............)))))))). (-31.41 = -32.72 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:49 2006