Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,415,200 – 5,415,299 |
Length | 99 |
Max. P | 0.860587 |
Location | 5,415,200 – 5,415,299 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -25.13 |
Consensus MFE | -16.76 |
Energy contribution | -17.24 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.10 |
Mean z-score | -1.90 |
Structure conservation index | 0.67 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5415200 99 + 22407834 CUUCCCCAACCGAAACUUAAUAGAGUGGCAAUGGCUUUAAAAGAGCAAACUCUGUCAUUGUUUCGACUGAUUAGAGGCACGAAUUCAAAAGAAUCAUUU--------------- ((((..((..((((((...(((((((.......((((.....))))..)))))))....))))))..))....))))...((.(((....)))))....--------------- ( -19.50) >DroSec_CAF1 35092 96 + 1 CUUCCUCAACCGAAACUUAAUAGAGUGGCAAUGGCUUUUAAAGAGCAAACUCUGUCAUUGUUUUGGCUGAUUAGAGGCACGCAUUCAAAAUAAUCG------------------ ((((.(((.(((((((...(((((((.......((((.....))))..)))))))....))))))).)))...))))...................------------------ ( -22.40) >DroSim_CAF1 34984 96 + 1 CUUCCCCAACGGAAACUUAAUAAAGUGGCAAUGGCUUUUAAAGAACAAACUCUGUCAUUGUUUCGGCUGAUUGGAGGCAGGCAUUGUAAAGAAUGG------------------ ((.(((((((((..((((....))))(((((((((..................)))))))))....))).)))).)).)).((((......)))).------------------ ( -19.37) >DroEre_CAF1 33498 114 + 1 CUGCCCCAGCCGAAACUUAAUAGAGUGGCAAUGGCUCUUAAAGAGCAAACUCUGUCAUUGUUUCGGUUGAUUAAAGCCGAGAAGGCAAAAAAAUGCAUUAAUCAAUUCAAUAUU .(((..((((((((((...(((((((.......((((.....))))..)))))))....))))))))))......(((.....)))........)))................. ( -34.90) >DroYak_CAF1 41200 110 + 1 CUUCCCCAACCGAAACUUAAUAGAGUGGCAAUGGCUUUUAAAGAGCUAACUCUGUCAUUGUUUCGGCUGAUUAGAGCCACGAAAUCAAAAGAAUUCAUUAAAGAAUUCUA---- .(((.......(((((...(((((((.....((((((.....)))))))))))))....)))))((((......))))..)))......(((((((......))))))).---- ( -29.50) >consensus CUUCCCCAACCGAAACUUAAUAGAGUGGCAAUGGCUUUUAAAGAGCAAACUCUGUCAUUGUUUCGGCUGAUUAGAGGCACGAAUUCAAAAGAAUCC_UU_______________ ......((.(((((((...(((((((.......((((.....))))..)))))))....))))))).))............................................. (-16.76 = -17.24 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:48 2006