Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,410,190 – 5,410,301 |
Length | 111 |
Max. P | 0.798559 |
Location | 5,410,190 – 5,410,301 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -38.19 |
Consensus MFE | -16.84 |
Energy contribution | -16.65 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.24 |
Mean z-score | -2.40 |
Structure conservation index | 0.44 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5410190 111 - 22407834 UUUCGUAUGUGCUGGCAAUUCGCGGCACUUCUUGG-CCGCUUUUCACGGUUUCCUUCUGAUGAGUGCCACGCAUGCGCAU-UUGCAUGUGGCAGCAACAUUUUCACAGC--UGCC ....(((((((.(((((....(((((.(.....))-))))..(((((((.......))).))))))))))))))))((..-..))....((((((............))--)))) ( -41.30) >DroPse_CAF1 36376 115 - 1 UCCCGAAUCUGUUGGCAAUUUGAUGCAGUUCUUGUGGCGCAUUUCAUGGCUCCGUUCUGAGGGGAGCUGCGCAUGCGCUUGUUGCAUGUUGUGGCAACAUUUUCAUGGAAUUGCA ...(((((.((....))))))).((((((((....(((((((..(..((((((.(.....).))))))..).))))))).....((((..(((....)))...)))))))))))) ( -39.00) >DroEre_CAF1 28411 110 - 1 UUUCGUAUGUGCUGGCAAUUUGCGGCACUUC-UGG-CCGCUUUUCACGGCUGCUUUCUGAUGAGUGCCACGCAUGCGCAU-UUGCAUGUGGCAGCAACAUUUUCACAGC--UGCC ....(((((((.(((((....(((((.(...-.))-))))..(((((((.......))).))))))))))))))))((..-..))....((((((............))--)))) ( -40.00) >DroYak_CAF1 35964 111 - 1 UUUCGUAUGUGUUGGCAAUUUGCGGCACUUCUUGG-CCGCUUUUCACGGUUUCUUUCUGAUGAGAGCCACGCAUGCGCAU-UUGCAUGUGGCAGCAACAUUUUCACAGC--UGCC ....((((((((.(((.....(((((.(.....))-)))).((((((((.......))).))))))))))))))))((..-..))....((((((............))--)))) ( -41.80) >DroAna_CAF1 33294 107 - 1 ACUGAAAUGUGUUGCAUAUUUGAGGCAGUUCCUGU-UUGCUUUUCACGGUUUCGUUCUGAUGAGAGCCACGCAUGCGCAU-UUGCAUGUGAAGCCCACAUUUUCCAUGC------ ...((((((((..........(((((((.......-)))))))....(((((((((((....)))))...(((((((...-.)))))))))))))))))))))......------ ( -31.20) >DroPer_CAF1 36046 115 - 1 GCCCGAAUCUGUUGGCAAUUUGAUGCAGUUCUUGUCGCGCAUUUCAUGGCUCCGUUCUGAUGGGAGCUGCGCAUGCGCUUGUUGCAUGUUGUGGCAACAUUUUCAUGGAAUUUCA .((.(((..(((((.((.......((((((((..(((.((.............))..)))..))))))))(((((((.....)))))))..)).)))))..)))..))....... ( -35.82) >consensus UCUCGAAUGUGUUGGCAAUUUGAGGCACUUCUUGG_CCGCUUUUCACGGCUUCGUUCUGAUGAGAGCCACGCAUGCGCAU_UUGCAUGUGGCAGCAACAUUUUCACAGC__UGCC ........(((((..........)))))..........((.......((((((........))).))).((((((((.....))))))))...)).................... (-16.84 = -16.65 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:42 2006