Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,404,829 – 5,404,934 |
Length | 105 |
Max. P | 0.695366 |
Location | 5,404,829 – 5,404,934 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.76 |
Mean single sequence MFE | -34.28 |
Consensus MFE | -28.82 |
Energy contribution | -28.94 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.38 |
Structure conservation index | 0.84 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695366 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5404829 105 - 22407834 ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCCGGCUGAUUGCUCAAAAGCAUUUUCGGGCCGAGACCAAUUGGUAAUGCUGCUGCACGGAUUUUAGCCAAUU ..((((((.(((...((....))..))).))))))((((((.((((....))))..((((.(((((......)))))..(((....)))))))..)))))).... ( -35.70) >DroSec_CAF1 25111 105 - 1 ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCGGGCUGAUUGCUCAAAAGCAUUUUCAGGCCUAUACCUAUUGAUAAUGCUCCUGCACGGAUUUUAGCCAAUU ..(((((((.(((.....))).))))..(((((.((.((((.((((....))))...)))).))...............(((....))))))))....))).... ( -30.60) >DroSim_CAF1 24355 105 - 1 ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCCGGCUGAUUGCUCAAAAGCAUUUUCAGGCCUAUACCUAUUGGUAAUGCUCCUGCACGGAUUUUAGCCAAUU ..((((((.(((...((....))..))).))))))((((((.((((....))))....((((..((((((....))).)))..))))........)))))).... ( -33.90) >DroEre_CAF1 23110 104 - 1 ACGGCGAAGGCGUUUGCUGCGGUUUCGUGUUCGCCGGCUGGUUGCUCAAAAGCAUUUUCGGGCCGAGACCUAUUGGUAUUACUCCUGCACGGAU-UUAGCCAAUU ..((((((.(((...((....))..))).))))))((((((.((((....))))..((((.((.((((((....)))....)))..)).)))).-)))))).... ( -35.90) >DroYak_CAF1 30544 104 - 1 ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCCGGCUGGUUGCUCAAAAGCAUUUUCGGGCCGCAACUUAUUGGUAUUACUCCUGCACGGAU-GUAGCCAAUU ..((((((.(((...((....))..))).))))))((((.(.((((....))))....).)))).......((((((..((((((.....))).-))))))))). ( -35.30) >consensus ACGGCGAAGGCGUUUGCUGCGGUUUCGUAUUCGCCGGCUGAUUGCUCAAAAGCAUUUUCGGGCCGAGACCUAUUGGUAAUGCUCCUGCACGGAUUUUAGCCAAUU ..((((((.(((...((....))..))).))))))((((((.((((....))))...))).))).......((((((.....(((.....))).....)))))). (-28.82 = -28.94 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:41 2006