Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,386,704 – 5,386,795 |
Length | 91 |
Max. P | 0.820393 |
Location | 5,386,704 – 5,386,795 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 80.86 |
Mean single sequence MFE | -36.27 |
Consensus MFE | -21.70 |
Energy contribution | -22.62 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.30 |
Mean z-score | -2.31 |
Structure conservation index | 0.60 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5386704 91 - 22407834 CAACUC--CAGAUGAGCCAUUCCCGAUAAGUUCUUCAGGGGGCUGGCCACACUGGCCCAGGGAUUCGG-------------CCAGGCCAGACUUGGCUCAUCUCUG ......--.(((((((((((((((((........)).)))))((((((....(((((.........))-------------)))))))))...))))))))))... ( -40.00) >DroSec_CAF1 7135 91 - 1 CAACUC--CAGAUGAGCCAUUCCCGAUAAGUUCUUCAGGGGGCUGGCCACACUGGCCCAGGGAUUCGG-------------CCAGGCCAGACUUGGCUCAUCUCUG ......--.(((((((((((((((((........)).)))))((((((....(((((.........))-------------)))))))))...))))))))))... ( -40.00) >DroSim_CAF1 6130 91 - 1 CAACUC--CAGAUGAGCCAUUCCCGAUAAGUUCUUCAGGGGGCUGGCCACACUGGCCCAGGGAUUCGU-------------CCAGGCCAGACUUGGCUCAUCUCUG ......--.(((((((((((((((((........)).)))))((((((...(((...)))(((....)-------------)).))))))...))))))))))... ( -37.50) >DroEre_CAF1 4532 103 - 1 CGACUC--CAGAUGUGGCAUUCCCGAUAAGUUCUUCAG-GGGCUGGCCACACUGGCCCAGGGAUUCGGCUUUUGGCCCAGACCAGGCCGGACUCGGCUCAUCUCUG .....(--(((.((((((..((((((........)).)-)))...))))))))))..(((((((..(((((((((((.......)))))))...)))).))))))) ( -42.10) >DroYak_CAF1 11699 88 - 1 CGACUCCCCAGAUGUGCCAUUCCCGAUAAGUUCCUCUGGGGGCUGGCCACACUGGCCCAAGGAUUCGG------------------CCAGACUUGGCUCAUCUCUG .........(((((.((((.((((((.....((((....((((..(.....)..)))).)))).))))------------------...))..)))).)))))... ( -31.80) >DroAna_CAF1 8304 80 - 1 CCACUC--CAGAUGGAGCAUCUUUGAUAAGGUCUUCAGGGGGCUGGCCACACUGGCCCACGGAUUUGG-------------CA---CAGGACUUGGUC-------- ((((((--(...(((((.(((((....)))))))))).))))(((((((..(((.....)))...)))-------------).---)))....)))..-------- ( -26.20) >consensus CAACUC__CAGAUGAGCCAUUCCCGAUAAGUUCUUCAGGGGGCUGGCCACACUGGCCCAGGGAUUCGG_____________CCAGGCCAGACUUGGCUCAUCUCUG .........((((((((((...((((.....((((....((((..(.....)..)))).)))).)))).........................))))))))))... (-21.70 = -22.62 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:36 2006