Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,379,127 – 5,379,241 |
Length | 114 |
Max. P | 0.906340 |
Location | 5,379,127 – 5,379,241 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 88.30 |
Mean single sequence MFE | -25.38 |
Consensus MFE | -20.17 |
Energy contribution | -19.30 |
Covariance contribution | -0.87 |
Combinations/Pair | 1.24 |
Mean z-score | -2.13 |
Structure conservation index | 0.80 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5379127 114 - 22407834 CACUUUCUAUGGCACGAGCAUGGAAAACCUUUUUAGAUCCAAGCAUUGCUUAACAAUUUUUCCAGCUUGAACUUUACACUACCAGAUGUGAGCAUUGAGAAAAACCUGAUA-AUA ...(((((...((.(((((.(((((((.((....))....((((...))))......)))))))))))).......(((........))).))....))))).........-... ( -22.60) >DroSec_CAF1 36473 113 - 1 CACUUUCUAUGGCACGAGCAUGGAAAACCUUUUUAGACCCAAGCAUUGCUUAACAAUUUUUCCAGCUUGAACUUUACACUACAAGAUGUAACCAUAG-GAAAAACCCGAUA-AUG ...(((((((((..(((((.(((((((.((....))....((((...))))......))))))))))))....(((((........)))))))))))-)))..........-... ( -25.60) >DroSim_CAF1 37002 113 - 1 CACUUUCUAUGGCACGAGCAUGGAAAACCUUUUUAGACCCAAGCAUUGCUUAACAAUUUUUCCAGCUUGAACUUUACACUACAAGAUGUAACCAUAG-GAAAAACCCGAUA-AUA ...(((((((((..(((((.(((((((.((....))....((((...))))......))))))))))))....(((((........)))))))))))-)))..........-... ( -25.60) >DroEre_CAF1 39636 114 - 1 AACUUUCUAUGGCACGAGCAUGGAAAACCUUUUUAGGCCUAGGCAUUGCUUAACAAUUUUUCCGGCUUGCACUGUACACUGCAAAAUGUACUCGUGG-CGAAGAGCUCAUACAUA ....((((.((.((((((..((((((((((....)))..(((((...))))).....)))))))..(((((........)))))......)))))).-)).)))).......... ( -27.70) >consensus CACUUUCUAUGGCACGAGCAUGGAAAACCUUUUUAGACCCAAGCAUUGCUUAACAAUUUUUCCAGCUUGAACUUUACACUACAAGAUGUAACCAUAG_GAAAAACCCGAUA_AUA ......((((((..(((((.(((((((.((....))....((((...))))......))))))))))))....(((((........))))))))))).................. (-20.17 = -19.30 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:35 2006