Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,378,135 – 5,378,254 |
Length | 119 |
Max. P | 0.500000 |
Location | 5,378,135 – 5,378,254 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.38 |
Mean single sequence MFE | -44.15 |
Consensus MFE | -39.69 |
Energy contribution | -40.20 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.90 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5378135 119 + 22407834 UGCCCACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUU-UGGAGGUGGUUGUGGUCGUGGUGGGGCAGCUCCAAUGGCGCCAGGCGGAGCUUGGACAAAUGACAGUGGACGACU ..((.(((((.(((((((((((....))))))))))))))))..-.)).(((.(((...(((((..((....((((((..((....))...))))))....)).)))))....))).))) ( -46.10) >DroSec_CAF1 35474 116 + 1 UGCCCACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUU-UGGAGGUGG---UGGUCGUGGUGGGGCAGCUCCAAUGGCGCCAGGCGGAGCUUGGACAAAUGACACUGGACGACU .(((((((((.(((((((((((....))))))))))))))))..-..).)))((---(.(((.(((((...((..((((..(((.((....)).)))))))....)).)))))))).))) ( -44.80) >DroSim_CAF1 36035 116 + 1 UGCCCACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUU-UGGAGGUGG---UGGUCGUGGUGGGGCAGCUCCAAUGGCGCCAGGCGGAGCUUGGACAAAUGACACUGGACGACU .(((((((((.(((((((((((....))))))))))))))))..-..).)))((---(.(((.(((((...((..((((..(((.((....)).)))))))....)).)))))))).))) ( -44.80) >DroEre_CAF1 38712 103 + 1 UGCCCACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUUCUGGAGGUGG---UG--------------GCUCCAAUGGCGCCAGGCGGAGCUUGGACAAAUGACAGUGGACGGCU .(((.(((((.(((((((((((....))))))))))))))))..(((....((.---.(--------------(((((..((....))...))))))....)).....))).....))). ( -40.90) >consensus UGCCCACCGUACAGUAGUCACUAAUGGGUGGCUGCUGAUGGUUU_UGGAGGUGG___UGGUCGUGGUGGGGCAGCUCCAAUGGCGCCAGGCGGAGCUUGGACAAAUGACACUGGACGACU .(((.(((((.(((((((((((....))))))))))))))))...(((((.((..................)).)))))..)))(((((((...)))))).).................. (-39.69 = -40.20 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:34 2006