Locus 1986

Sequence ID 2L_DroMel_CAF1
Location 5,377,714 – 5,377,830
Length 116
Max. P 0.618588
window3205

overview

Window 5

Location 5,377,714 – 5,377,830
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 78.82
Mean single sequence MFE -20.53
Consensus MFE -17.35
Energy contribution -18.13
Covariance contribution 0.78
Combinations/Pair 1.06
Mean z-score -1.02
Structure conservation index 0.85
SVM decision value 0.17
SVM RNA-class probability 0.618588
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5377714 116 - 22407834
GGGAAAAGCUGAGAUUAUGAUCAGUCAACAGGGUGCAGGAUUAAACUGUACCGAUUUUUUGCCAUUUUAUAGUAUUAAAGUUGAGUUGAGUUUAUUCUACGAUUACUUAUCGUUUA
.((((...((((........))))(((((..(((((((.......)))))))((((((.(((.........)))..))))))..))))).....))))(((((.....)))))... ( -25.80)
>DroSec_CAF1 35092 89 - 1
GGGAAAAGCUGAGAUUAUGAUCAGCCAA-AGGGUGCAGGAUUAAACUGUACCAAUUUUUUGCCAUUUUAUAUUAUUUAAGUUGAGUU--------------------------UUA
((.(((((((((........)))))...-..(((((((.......)))))))....)))).))........................--------------------------... ( -22.50)
>DroSim_CAF1 35648 87 - 1
GGGAAAAGCUGAGAUUAUGAUCAGCCAA-AGGGUGCAGGAUUAAACU--ACAGAUUUUUUGCCAUUUUAUAUUAUUUAAGUUGAGUU--------------------------UUA
((.((((.(((((.((.(((((.(((..-..)))....)))))))))--.)))...)))).))........................--------------------------... ( -13.30)
>consensus
GGGAAAAGCUGAGAUUAUGAUCAGCCAA_AGGGUGCAGGAUUAAACUGUACCGAUUUUUUGCCAUUUUAUAUUAUUUAAGUUGAGUU__________________________UUA
((.(((((((((........)))))......(((((((.......)))))))....)))).))..................................................... (-17.35 = -18.13 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:33 2006