Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,376,650 – 5,376,767 |
Length | 117 |
Max. P | 0.763623 |
Location | 5,376,650 – 5,376,767 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.74 |
Mean single sequence MFE | -27.11 |
Consensus MFE | -19.88 |
Energy contribution | -20.84 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.05 |
Mean z-score | -1.86 |
Structure conservation index | 0.73 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5376650 117 - 22407834 CAAGUGGGCGUAGCUUCAGCUCCAUCUCUGCCUGUAUUCCAACCUCAUUGGCACUGAUUCGUUCAGCUCGCCAAAAGCUAAAUGCCGAAAAA---AAAAAUUCCCACAAAUUGUAAUCUU ...(((((((.((((..(((...(((..((((.................))))..)))..))).))))))))....((.....)).......---.........)))............. ( -24.03) >DroSec_CAF1 34022 116 - 1 CAAGUGGGCGUAGCUUCAGCUCCAUCUCUGCCUGUAUUCCAACCUCAUUGGCACUGAUUCGUUCGGCUCGCCAAAAGCUAAAUGCCGAAAAA----AAAAUGCCCACAAAUUGUAAUCUU ...(((((((((((....)))..(((..((((.................))))..)))...((((((..((.....)).....))))))...----...))))))))............. ( -30.83) >DroSim_CAF1 34579 116 - 1 CAAGUGGGCGUAGCUUCAGCUCCAUCUCUGCCUGUAUUCCAACCUCAUUGGCACUGAUUCGUUCGGCUCGCCAAAAGCUAAAUGCCGAAAAA----AAAAUGCCCACAAAUUGUAAUCUU ...(((((((((((....)))..(((..((((.................))))..)))...((((((..((.....)).....))))))...----...))))))))............. ( -30.83) >DroEre_CAF1 37214 99 - 1 CAAGUGGGCGUAGCUUCAGCUC-----------------CAACCUCAUUGGCACUGAUUCGUUCAGCUCGCCAAAAGCUAAAUGCCGAACAA---AAAAAGGCCCACAAA-UGUAAUCUU ...((((((...(..((((..(-----------------(((.....))))..))))..)((((.((..((.....)).....)).))))..---......))))))...-......... ( -27.10) >DroAna_CAF1 41141 113 - 1 UCUGUGGGCGUUUCUUGAGCUCCAUCUCU------AUCGCUGCCUCAUUGGCACUGAUUCGUUCAGCUCGCCAAAAGCUUAAA-CCGACAAAAACGAAAAUACCAACAAAUUGUAGACUU ..(((((...((((..(((((........------((((.((((.....)))).))))......)))))((.....)).....-...........))))...)).)))............ ( -22.74) >consensus CAAGUGGGCGUAGCUUCAGCUCCAUCUCUGCCUGUAUUCCAACCUCAUUGGCACUGAUUCGUUCAGCUCGCCAAAAGCUAAAUGCCGAAAAA____AAAAUGCCCACAAAUUGUAAUCUU ...(((((((((((....)))..........................(((((.((((.....))))...))))).........................))))))))............. (-19.88 = -20.84 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:31 2006