Locus 1982

Sequence ID 2L_DroMel_CAF1
Location 5,375,013 – 5,375,126
Length 113
Max. P 0.998810
window3201

overview

Window 1

Location 5,375,013 – 5,375,126
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 95.40
Mean single sequence MFE -23.36
Consensus MFE -21.54
Energy contribution -21.82
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -2.12
Structure conservation index 0.92
SVM decision value 3.23
SVM RNA-class probability 0.998810
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5375013 113 - 22407834
UUGCAGUGUGCAAAACAACUUUGCUUUGCAAAUCUUCAUUUUCGAAUUUAAAUCACGCCCCGAGUAAUUUGCAUUCGCACAACAACUUUGAUAACUCUGUUUUGCACAUCAGC
..((.((((((((((((..(((((...)))))..........(((((.(((((.((.......)).))))).)))))....................))))))))))))..)) ( -24.70)
>DroSec_CAF1 32374 113 - 1
UUUCAGUGUGCGAAACAACUUUGCUUUGCAAAUCUUCAUUUUCGAAUUUAAAUCACGCCCCGAGUAAUUUGCAUUCGCACAACAACUUUGAUAACUCUGUUUUGCAAAUCAGC
.....(..(((((((((..(((((...)))))..........(((((.(((((.((.......)).))))).)))))....................)))))))))...)... ( -18.90)
>DroSim_CAF1 32952 113 - 1
UUUCAGUGUGCGAAACAACUUUGCUUUGCAAAUCUUCAUUUUCGAAUUUAAAUCACGCCCCGAGUAAUUUGCAUUCGCACAACAACUUUGAUAACUCUGUUUUGCACAUCAGC
.....((((((((((((..(((((...)))))..........(((((.(((((.((.......)).))))).)))))....................)))))))))))).... ( -23.80)
>DroEre_CAF1 35577 113 - 1
UUUCAGUGUGCGGUACAACUUUGCUCUGCAAAUCUUCAGCUUCGAAUUUAAAUUACGCCCCGAGUAAUUUGCAUUCGCACAACAACUUUGAUAACUCUGUUUUGCACCUCAGC
....((.((((((.(((..(((((...)))))..........(((((.((((((((.......)))))))).)))))....................))).)))))))).... ( -21.50)
>DroYak_CAF1 33373 113 - 1
UUUCAGUGUGCGAAACAACUUUGCUCCGCAAAUCUUCAUUUUCGAAUUUAAAUUACGCCCCGAGUAAUUUGCAUUCGUACAACAACUUUGAUAACUCUGUUUUGCACAUCAGC
.....((((((((((((..(((((...)))))..........(((((.((((((((.......)))))))).)))))....................)))))))))))).... ( -27.90)
>consensus
UUUCAGUGUGCGAAACAACUUUGCUUUGCAAAUCUUCAUUUUCGAAUUUAAAUCACGCCCCGAGUAAUUUGCAUUCGCACAACAACUUUGAUAACUCUGUUUUGCACAUCAGC
.....((((((((((((..(((((...)))))..........(((((.(((((.((.......)).))))).)))))....................)))))))))))).... (-21.54 = -21.82 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:29 2006