| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,373,504 – 5,373,609 |
| Length | 105 |
| Max. P | 0.572897 |
| Location | 5,373,504 – 5,373,609 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.94 |
| Mean single sequence MFE | -27.22 |
| Consensus MFE | -18.62 |
| Energy contribution | -17.90 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5373504 105 - 22407834 AAUUGGCAGU----GGCCAUUGGC-----AACUAAUUGCCGGCGAUAAUGCCGCCAGAUUC-GCUCGG-----CUAUUGGCAAACUGCUGACAAAUUAUUUAUGAUACACAUUUUGGUAG ..(((.((((----((((...(((-----((....)))))((((.......))))......-....))-----)))))).))).((((..(.....((((...))))......)..)))) ( -32.20) >DroPse_CAF1 59973 111 - 1 AAUUUUUAGUUUCAGGCCACAGGCAAAGCAACUAAUUGCCGGCGAUAAUGCCGCUCGAUUC-UCUCA------UUUUUGGCAAACUGCUGACAAAUUAUUUAUGAUAUAAUUUUAAAU-- .....(((((.....((((..(((((.........)))))(((......))).........-.....------....)))).....))))).(((((((.......))))))).....-- ( -21.00) >DroEre_CAF1 33993 107 - 1 AAUUGGCAGU----GGCCACUGGCA---CAACUAAUUGCCGGCGAUAAUGCCGCCAGAUUC-GCUGGG-----CUAUUGGCAAACUGCUGACAAAUUAUUUAUGAUACACGUUUUGGUAG ..(..(((((----.((((.((((.---(((....)))(((((((...((....))...))-))))))-----))).))))..)))))..)............................. ( -32.30) >DroYak_CAF1 31733 106 - 1 AAUUGGCAGU----GGCCAUUGGC-----AACUAAUUGCCGGCGAUAAUGCCGCCAGAUUGAGCUCGC-----UUAUUGGCAAACUGCUGACAAAUUAUUUAUGAUACACAUUUUGGUAG ..(..(((((----.((((..(((-----((....)))))((((.......))))....((((....)-----))).))))..)))))..)............................. ( -29.30) >DroAna_CAF1 37745 109 - 1 AAUUUUCAGU----GGCCAUUGGC-----AACUAAUUGCUGGCGAUAAUGCCGCCAUAAUA-UCUCUGGUUUUUUUUUGGCAAAUUGCUGACAAAUUAUUUAUGAUAUA-AUUUUGGUAG ........((----(((....(((-----((....)))))(((......)))))))).(((-((...(((..(((.(..((.....))..).)))..)))...))))).-.......... ( -24.10) >DroPer_CAF1 54155 111 - 1 AAUUUUUGGUUUCGGGCCACAGGCAAAGCAACUAAUUGCCGGCGAUAAUGCCGCUCGAUUC-UCUCA------UUUUUGGCAAACUGCUGACAAAUUAUUUAUGAUAUAAUUUUAAAU-- .......((..((((((....(((((.........)))))(((......)))))))))..)-)....------...(..((.....))..).(((((((.......))))))).....-- ( -24.40) >consensus AAUUGGCAGU____GGCCACUGGC_____AACUAAUUGCCGGCGAUAAUGCCGCCAGAUUC_GCUCGG_____UUAUUGGCAAACUGCUGACAAAUUAUUUAUGAUACACAUUUUGGUAG ......((((.....((((..(((.............)))((((.......))))......................)))).....)))).............................. (-18.62 = -17.90 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:28 2006