Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,360,211 – 5,360,331 |
Length | 120 |
Max. P | 0.643632 |
Location | 5,360,211 – 5,360,331 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -38.40 |
Consensus MFE | -29.43 |
Energy contribution | -27.88 |
Covariance contribution | -1.55 |
Combinations/Pair | 1.42 |
Mean z-score | -1.80 |
Structure conservation index | 0.77 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5360211 120 + 22407834 CCUAUUCGGUCCCUGGGCCAUCAUCAUUGGGGAUCUGCUGAAGGAUCUGGCUCGGUUUUUGGCCGUCCUGGCCAUCUUUGUGUUUGGCUUUUCCAUGCACAUUGUGGCCCUGAAUCAGAG .......((((((..(..........)..))))))..(((((((((..((((........)))))))))((((((...(((((.(((.....))).)))))..)))))).....)))).. ( -43.60) >DroVir_CAF1 40742 120 + 1 UCUGUUCGGACCCUGGGCCAUCAUCAUUGGCGAUCUGCUUAAGGAUCUGGCGAGAUUUCUUGCCGUGCUCGCCAUCUUUGUGUUUGGCUUCUCCAUGCAUAUUGUGGCGUUGAAUCAAUC ...(((((.((.....((((.......))))(((((......))))).((((((....)))))))).).((((((...(((((.(((.....))).)))))..))))))..))))..... ( -38.60) >DroGri_CAF1 35092 120 + 1 UUUGUUCGGGCCCUGGGCCAUUAUCAUUGGUGAUCUCUUAAAGGAUCUGGCACGCUUUCUGGCCGUCCUCGCCAUCUUUGUGUUUGGCUUUUCCAUGCACAUUGUGGCACUAAAUCAAUC ........((((...))))......(((((((((((......))))).((.(((((....)).)))))..(((((...(((((.(((.....))).)))))..))))).....)))))). ( -33.70) >DroWil_CAF1 39675 120 + 1 UCUAUUCGGACCUUGGGCCAUUAUCAUUGGUGAUCUGCUAAAGGAUUUGGCUCGCUUUUUGGCAGUGUUGGCUAUAUUUGUGUUUGGCUUUUCCAUGCACAUUGUGGCGCUGAAUCAAUC ...((((((.....((((((..(((.(((((.....)))))..))).))))))(((....))).......((((((..(((((.(((.....))).))))).)))))).))))))..... ( -36.20) >DroMoj_CAF1 36229 120 + 1 UUUAUUCGGGCCGUGGGCCAUUAUUAUUGGCGAUCUGCUUAAGGAUCUAGCGAGAUUUCUCGCCGUGCUCGCUAUCUUUGUGUUUGGCUUUUCCAUGCAUAUCGUGGCGCUGAAUCAAUC ...((((((((((...((((.......))))(((((......)))))..(((((....))))))).))))(((((...(((((.(((.....))).)))))..)))))...))))..... ( -39.00) >DroAna_CAF1 23983 120 + 1 CCUCUUCGGACCCUGGGCCAUCAUCAUCGGGGAUCUGCUGAAGGAUUUGGCCAGGUUCUUGGCUGUGUUAGCCAUUUUCGUGUUUGGCUUUUCCAUGCACAUAGUGGCCCUGAAUCAGAG ...((((((.((((((..........)))))).....))))))((((((((((((....((((((...))))))...))((((.(((.....))).))))....)))))..))))).... ( -39.30) >consensus UCUAUUCGGACCCUGGGCCAUCAUCAUUGGCGAUCUGCUAAAGGAUCUGGCGAGAUUUCUGGCCGUGCUCGCCAUCUUUGUGUUUGGCUUUUCCAUGCACAUUGUGGCGCUGAAUCAAUC .......((.(....).)).......((((((((((......)))))(((((........))))).....(((((...(((((.(((.....))).)))))..))))))))))....... (-29.43 = -27.88 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:23 2006