Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,356,417 – 5,356,507 |
Length | 90 |
Max. P | 0.976474 |
Location | 5,356,417 – 5,356,507 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 77.22 |
Mean single sequence MFE | -19.84 |
Consensus MFE | -14.07 |
Energy contribution | -14.48 |
Covariance contribution | 0.41 |
Combinations/Pair | 1.18 |
Mean z-score | -2.12 |
Structure conservation index | 0.71 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5356417 90 + 22407834 CAAGGAAAAGCAUGUUGCAAAUCGUGUUUGACCUUGAUAUAACACAAUAAAAAUCAUGAAAUUUUCACUUCUCAAUAGAAGCUAGUGAUU (((((..(((((((........)))))))..)))))......(((...........(((.....)))(((((....)))))...)))... ( -18.70) >DroSec_CAF1 14645 90 + 1 CAAGGAGAAGCAUGUUGCAAAUCGUGUUUGACCUUGGUAUUACAAAAUAAAAAUCAUGAAAUUUUCACUUCUCAAUAGAAGCUAGUUAUU (((((..(((((((........)))))))..)))))...............................(((((....)))))......... ( -15.80) >DroSim_CAF1 14736 90 + 1 CAAGGAAAAGCAUGUUGCAAAUCGUGUUUGACCUUGAUGUUACAAAAUAAAAAUCAUGCAAAUUUCACUACUCAAUAGAUGCUAGUAAUU (((((..(((((((........)))))))..)))))..............................(((((((....)).).)))).... ( -14.30) >DroEre_CAF1 15833 78 + 1 CAAGGAAAAGCUG------------GCUUGACCUUGAUGCAACGACGUGAGAACCAUGAUAAUUGCACUUCCCAAGGGAAGCUAGCAGUU .........((((------------((((..(((((.(((((..(((((.....)))).)..))))).....))))).)))))))).... ( -25.20) >DroYak_CAF1 14893 90 + 1 CAAGGAAAAGCAUGCUACAAAUCGUGCUUGACCUUGAUAUUACUAAAUAAGAAUCAUGAGAAUUUUAGUUCUCAAUGGAAAUUGGUAGUU (((((..(((((((........)))))))..)))))..((((((((.......((((((((((....)))))).))))...)))))))). ( -25.20) >consensus CAAGGAAAAGCAUGUUGCAAAUCGUGUUUGACCUUGAUAUUACAAAAUAAAAAUCAUGAAAAUUUCACUUCUCAAUAGAAGCUAGUAAUU (((((..(((((((........)))))))..)))))...............................(((((....)))))......... (-14.07 = -14.48 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:18 2006