Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,356,150 – 5,356,264 |
Length | 114 |
Max. P | 0.725862 |
Location | 5,356,150 – 5,356,264 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -40.05 |
Consensus MFE | -32.72 |
Energy contribution | -32.72 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.32 |
Structure conservation index | 0.82 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5356150 114 + 22407834 CAUGUUAAAUUUUGGAU-U--UAUUUUUUCGCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUGGACAUGGUCCGCAUCCUGGUUGAUUA .................-.--.........((((....)...((((..((....)).)))).)))..(..((((((....)))((((.((((((...)))))).)))))))..)... ( -38.90) >DroVir_CAF1 36279 114 + 1 ---CGUGCAUUCGUGAUUCGUUAUUCGUGAUAAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUCGAUAUGGUCCGCAUUCUGGUUGAUUA ---.(((..(((((...((((..((.((......))))..))))...)))))..)))((((........))))((((((..((((..(((....)))..))))..))))))...... ( -38.80) >DroGri_CAF1 30274 101 + 1 ---GGU------------CG-AUUUCCCUUUCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUCGAUAUGGUCCGCAUCCUGGUCGACUA ---.((------------((-((.((((.....(((..(((.((((..((....)).)))))))......)))(((....))))))).)))))).(((((.((......)).))))) ( -39.50) >DroSim_CAF1 14477 106 + 1 --------AUUUUGGAU-U--UAUUUUUUCGCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUGGACAUGGUCCGCAUCCUGGUCGAUUA --------.........-.--.........((((....)...((((..((....)).)))).)))..(((((((((....)))((((.((((((...)))))).))))))))))... ( -40.20) >DroMoj_CAF1 32080 100 + 1 ---UUU--------------CUUUUCGAUUUUAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUCGACAUGGUCCGCAUUCUGGUGGAUUA ---...--------------..............((((....((((..((....)).))))))))......((((((((..((((..(((....)))..))))..)))))))).... ( -37.40) >DroAna_CAF1 19665 114 + 1 CAUGCUCGUAUUUCGUU-C--CCUUUCCCCCCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUGGACAUGGUCCGCAUCCUGGUCGACUA .((((.......(((((-.--(((........))).))))).((((..((....)).))))..))))(((((((((....)))((((.((((((...)))))).))))))))))... ( -45.50) >consensus ___GGU__AUUUU_GAU_C__UAUUCCUUCUCAGGCAACGACGGCCAAUGGAGACACGGCCUUGCAUUUGGCCGCCAGACGGCGGGACGUCGACAUGGUCCGCAUCCUGGUCGAUUA .................................(((..(((.((((..((....)).)))))))......)))(((((...((((..(((....)))..))))...)))))...... (-32.72 = -32.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:17 2006