Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,347,628 – 5,347,729 |
Length | 101 |
Max. P | 0.963569 |
Location | 5,347,628 – 5,347,729 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.55 |
Mean single sequence MFE | -24.52 |
Consensus MFE | -19.88 |
Energy contribution | -19.68 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -2.22 |
Structure conservation index | 0.81 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5347628 101 + 22407834 GUUUGGCCAAAAAACAGAGGCUAGC----AAGGAAAAG-CGCCCAAAAAAAAAAAAAACAGAGAACAGC-GAAUGUUAUUUGAUAGCUCGGCCCAAAUGUUUUGGCU ....((((((((......(((((((----..((.....-...))..............((((.((((..-...)))).))))...))).))))......)))))))) ( -25.50) >DroSec_CAF1 6016 93 + 1 UAUUGGCCAGAAAACAGAGGCUAGC----AAGGAAAAG-CGCCCGAA--------AAACAGAGAACAGC-GAACGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU ....((((((((......((((.((----..((.....-...))...--------...((((.(((...-....))).))))...))..))))......)))))))) ( -22.90) >DroSim_CAF1 6108 93 + 1 UAUUGGCCAGAAAACAGAGGCUAGC----AAGGAAAAG-CGCCCGAA--------AAACAGAGAACAGC-GAAUGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU ....((((((((......((((.((----..((.....-...))...--------...((((.((((..-...)))).))))...))..))))......)))))))) ( -24.90) >DroEre_CAF1 6872 94 + 1 UAUUAGCCAGAAAACAGAGGCCAGC----AAGCAAAACAGGCCC--------AAAAAACAGAGAACAGC-GAAUGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU ....((((((((......((((.((----..((.......))..--------......((((.((((..-...)))).))))...))..))))......)))))))) ( -25.70) >DroYak_CAF1 6135 101 + 1 UAUUAGCCAGAAAACAGAGGCCAGUCAGAAAGCAAAA--AGCCCGAAA----AAAAAACAGAGAACAGCAGAAUGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU ....((((((((......((((.........((....--.))......----......((((.((((......)))).)))).......))))......)))))))) ( -23.60) >consensus UAUUGGCCAGAAAACAGAGGCUAGC____AAGGAAAAG_CGCCCGAA_____AAAAAACAGAGAACAGC_GAAUGUUAUUUGAUAGCGCGGCCCAAAUGUUUUGGCU ....((((((((......((((.((......((........))...............((((.((((......)))).))))...))..))))......)))))))) (-19.88 = -19.68 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:15 2006