Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,346,536 – 5,346,627 |
Length | 91 |
Max. P | 0.983716 |
Location | 5,346,536 – 5,346,627 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 76.79 |
Mean single sequence MFE | -21.55 |
Consensus MFE | -14.20 |
Energy contribution | -13.87 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.20 |
Mean z-score | -2.43 |
Structure conservation index | 0.66 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5346536 91 + 22407834 UGUUGCCAAUGAAAAUGCAAAUUGUUGGUAACA----AAUAUUGGUAA-AAUGCGGA-GGCCGUA-----GGAAUUUGUGCAAUGCGAGUGCGAAGUGAAGG (((((((((..(.........)..)))))))))----...........-..(((((.-..)))))-----....((((..(.......)..))))....... ( -20.50) >DroVir_CAF1 24639 90 + 1 UGUUGCCAAUGAAAAUGCCAAUUGUUGGCAACAACAAAAUAUUGGUAG-AAUGCGGCGGGCCAGCAAA--AUAAAUUGUGCAAUGCAAAUGCA--------- .(((((((((.....((((((((((((....)))))....))))))).-..(((((....)).)))..--....)))).)))))((....)).--------- ( -27.30) >DroPse_CAF1 17212 89 + 1 UGUUGCCAAUGAAAAUGCAAAUUGUUGGUAACA----AAUAUUGGUAA-AAUGCGGA-GGCCGAG-----AGUAUUUGUGCAAUGCGAGUGCGAAGCGAG-- (((((((((..(.........)..)))))))))----....(((((..-........-.))))).-----.((((((((.....))))))))........-- ( -22.50) >DroGri_CAF1 18469 83 + 1 UGUUGCCAAUGAAAAUGCAAAUUGUUGGUAACA----AAUAUUGGUAA-AAUGCGGA-AGCCAACAAAUUGU----AGUGCAACGCGAAUGCA--------- .((((((..(....)(((((.((((((((..(.----..((((.....-))))..).-.)))))))).))))----)).)))))((....)).--------- ( -19.90) >DroWil_CAF1 17537 82 + 1 UGUUGCCAAUGAAAAUGCAAAUUGUUGGUAACA----AAUAUUGGUAAAAAUGCGGA-GGCCAAA-----AGAAUGUGCGAAAU---------AAGCGAAC- (((((((((..(.........)..)))))))))----....(((((...........-.))))).-----......(((.....---------..)))...- ( -16.60) >DroPer_CAF1 17152 89 + 1 UGUUGCCAAUGAAAAUGCAAAUUGUUGGUAACA----AAUAUUGGUAA-AAUGCGGA-GGCCGAG-----AGUAUUUGUGCAAUGCGAGUGCGAAGCGAG-- (((((((((..(.........)..)))))))))----....(((((..-........-.))))).-----.((((((((.....))))))))........-- ( -22.50) >consensus UGUUGCCAAUGAAAAUGCAAAUUGUUGGUAACA____AAUAUUGGUAA_AAUGCGGA_GGCCAAA_____AGAAUUUGUGCAAUGCGAGUGCGAAGCGA___ (((((((((..(.........)..)))))))))........(((((.............)))))...................................... (-14.20 = -13.87 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:14 2006