Locus 197

Sequence ID 2L_DroMel_CAF1
Location 591,504 – 591,600
Length 96
Max. P 0.600528
window294

overview

Window 4

Location 591,504 – 591,600
Length 96
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 91.11
Mean single sequence MFE -20.81
Consensus MFE -17.21
Energy contribution -17.40
Covariance contribution 0.19
Combinations/Pair 1.04
Mean z-score -1.87
Structure conservation index 0.83
SVM decision value 0.14
SVM RNA-class probability 0.600528
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 591504 96 + 22407834
CCCAUCAAU---GCACCAAAAAUGUGAACAAAUUAAAUUGUCAACUUUUGUCGUCACUUUCUUCC----UUGGUGACCUCUCAAUUUGUUUGUUUGUUGUUGG
.........---...((((....(..(((((((.((((((.........(..((((((.......----..))))))..).)))))))))))))..)..)))) ( -19.60)
>DroSec_CAF1 22768 95 + 1
CCCAUCAAU---GCACCAA-AAUGUGAACAAAUUAAAUUGUCAACUUUUGUCGUCACUUUCUUCC----UUGGUGACCUCUCAAUUUGUUUGUUUGUUGUUGG
.........---...((((-...(..(((((((.((((((.........(..((((((.......----..))))))..).)))))))))))))..)..)))) ( -20.30)
>DroSim_CAF1 21376 95 + 1
CCCAUCAAU---GCACCAA-AAUGUGAACAAAUUAAAUUGUCAACUUUUGUCGUCACUUUCUUCC----UUGGUGACCUCUCAAUUUGUUUGUUUGUUGUUGG
.........---...((((-...(..(((((((.((((((.........(..((((((.......----..))))))..).)))))))))))))..)..)))) ( -20.30)
>DroEre_CAF1 23131 96 + 1
CCCAUCAAU---GCACCAAAAAUGUGAACAAAUUAAAUUGUCAACUUUUGUCGUCACUUUCUUCC----UUGGUGACCUCUCAAUUUGUUUGUUUGUUGUUGG
.........---...((((....(..(((((((.((((((.........(..((((((.......----..))))))..).)))))))))))))..)..)))) ( -19.60)
>DroYak_CAF1 23098 96 + 1
CCCACCAAU---GCACCAAAAAUGUGAACAAAUUAAAUUGUCAACUUUUGUCGUCACUUUCUUCC----UUGGUGACCUCUCAAUUUGUUUGUUUGUUGUUGG
.........---...((((....(..(((((((.((((((.........(..((((((.......----..))))))..).)))))))))))))..)..)))) ( -19.60)
>DroAna_CAF1 23811 103 + 1
CCCUCUGAUUUCGAACACAAAUUGGGAACAAAUUAAAUUGUCAACUUUUGUCGUCACUCCCCCCGCCCAGCGGUGACCUCUCGAUUUGUUUGUUUGUUGUUGG
....(..((..(((((((((((((((((((((..............))))).((((......((((...)))))))).)))))))))))..)))))..))..) ( -25.44)
>consensus
CCCAUCAAU___GCACCAAAAAUGUGAACAAAUUAAAUUGUCAACUUUUGUCGUCACUUUCUUCC____UUGGUGACCUCUCAAUUUGUUUGUUUGUUGUUGG
...............((((....(..(((((((.((((((.........(..((((((.............))))))..).)))))))))))))..)..)))) (-17.21 = -17.40 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:00 2006