Locus 1966

Sequence ID 2L_DroMel_CAF1
Location 5,335,810 – 5,335,904
Length 94
Max. P 0.757312
window3181

overview

Window 1

Location 5,335,810 – 5,335,904
Length 94
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -27.18
Consensus MFE -17.43
Energy contribution -18.22
Covariance contribution 0.78
Combinations/Pair 1.23
Mean z-score -2.13
Structure conservation index 0.64
SVM decision value 0.49
SVM RNA-class probability 0.757312
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5335810 94 + 22407834
CACACCGGAAGUGAUCGGGUUUUAUCGAAUUGCUUCGAUUACUAUUUGCGUUCGGC--UUCGAUUCUUCGUUUUCGAUUUCGU--UCGAUUGCGACCG-----
.....(((..(..(((((((...((((((....)))))).)))....(((.((((.--..(((....)))...))))...)))--.))))..)..)))----- ( -26.20)
>DroSec_CAF1 5679 94 + 1
CACACCGGAAGUGAUCGGGUUUUAUCGAAUUGCUUCGAUUACUAUUUACGUUCGGC--UUCGAUUCUUCGUUUUCGAUUUCGU--UCGAUUGCGACCG-----
....(((((.((((...(((...((((((....)))))).)))..)))).))))).--.........((((..((((......--))))..))))...----- ( -26.00)
>DroSim_CAF1 5853 94 + 1
CACACCGGAAGUGAUCGGGUUUUAUCGAAUUGCUUCGAUUACUAUUUGCGUUCGGC--UUCGAUUCUUCGUUUUCGAUUUCGU--UCGAUUGCGACCG-----
.....(((..(..(((((((...((((((....)))))).)))....(((.((((.--..(((....)))...))))...)))--.))))..)..)))----- ( -26.20)
>DroEre_CAF1 5722 94 + 1
CACACCGGAAGUGAUCGGUUUUUAUCGAAUUGCUUCGAUUACUAUUUGCUUUCGGU--UUCGGUUCCUUGUUUUCGAUUUCGU--UCGAUUGCGACCG-----
...((((((((..(..(((....((((((....)))))).)))..)..))))))))--..(((((....((..((((......--))))..)))))))----- ( -30.50)
>DroYak_CAF1 6010 96 + 1
CACACCGGAAGUGAUCGGGUUUUAUCGAGUUGCUUCGAUUACUAUUUACGUUCGAUUCUUCGAUUCUUCGUUUUCGAUUUCGU--UCGAUUGCGACCG-----
.....(((..(..(((((((...((((((....)))))).)))....(((.((((.....(((....)))...))))...)))--.))))..)..)))----- ( -25.90)
>DroMoj_CAF1 8022 95 + 1
CGAACCGGAAGUGAA----UUUUCCAACACUUGUUCAAGCAAGCUUCGGCUUCGGC--UUCGUU--GUCGUUUAUGCUGUCGCUGUCGAUUGCGAUUGCGAUU
.((((...(((((..----........))))))))).(((((((....))).((((--......--))))....))))(((((.((((....)))).))))). ( -28.30)
>consensus
CACACCGGAAGUGAUCGGGUUUUAUCGAAUUGCUUCGAUUACUAUUUGCGUUCGGC__UUCGAUUCUUCGUUUUCGAUUUCGU__UCGAUUGCGACCG_____
....(((((.((((...(((...((((((....)))))).)))..)))).)))))............((((..((((........))))..))))........ (-17.43 = -18.22 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:09 2006