Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,322,823 – 5,322,940 |
Length | 117 |
Max. P | 0.982750 |
Location | 5,322,823 – 5,322,940 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.03 |
Mean single sequence MFE | -41.77 |
Consensus MFE | -28.45 |
Energy contribution | -30.63 |
Covariance contribution | 2.18 |
Combinations/Pair | 1.20 |
Mean z-score | -1.55 |
Structure conservation index | 0.68 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5322823 117 + 22407834 CGAGAGUUGACUGCCGCCUGAUUGUAAUCUGGUGGUGGAGCUGCAGGUACAUGUUGAUUGGCUG---GCAUGAGCUGUCCAGCCAUUUCGCUGGGAGCAGUGGGUCCAGGUGUUGCCGCA ....((((..(..(((((.(((....))).)))))..)))))((.(((((((.(.(((((((((---(((.....)).)))))))..((((((....))))))))).).))).)))))). ( -46.50) >DroSec_CAF1 98389 120 + 1 CGAGAAUUGACUGCCGCCUGAUUGUAAUCUGGUGGUGGAGCUGCAGGUACAUGUUGAUUGGAUGGCGGCAUGAGCUGUCCAGCCAUUUCGCUGGGAGCAGUGGGUCCAGGUGUGGCCGCA ..........(..(((((.(((....))).)))))..)....((.(((((((.(.((((((.(((((((....)))).))).)))..((((((....))))))))).).)))).))))). ( -45.00) >DroWil_CAF1 81497 90 + 1 CGUGAAUUGGCCGCCGCCUGAUUAUAGUCUGGCGGUGGCACUGCAGGUACAUGAUGUUG---------------------------UUCCGUGGUAGCAG--GAUGAUGAUGUUGUUGC- .........(((((((((.(((....))).)))))))))((..(.((.(((......))---------------------------).)))..))(((((--.((....)).)))))..- ( -33.80) >consensus CGAGAAUUGACUGCCGCCUGAUUGUAAUCUGGUGGUGGAGCUGCAGGUACAUGUUGAUUGG_UG___GCAUGAGCUGUCCAGCCAUUUCGCUGGGAGCAGUGGGUCCAGGUGUUGCCGCA ..........((((((((.(((....))).))))))))....((.(((((((.(.((((((((((((((....)))).)))))))..((((((....))))))))).).)))).))))). (-28.45 = -30.63 + 2.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:07 2006