Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,318,174 – 5,318,268 |
Length | 94 |
Max. P | 0.554786 |
Location | 5,318,174 – 5,318,268 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 84.03 |
Mean single sequence MFE | -37.48 |
Consensus MFE | -27.90 |
Energy contribution | -29.23 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.15 |
Mean z-score | -1.75 |
Structure conservation index | 0.74 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5318174 94 - 22407834 CAGGCGGAGCUGUGGUGACCACCA------GCCAAGUUAACAGCGGCACAAGUGUGGUUCAUGCAACACGUGGAGCCACCGCUGCGGCUGCCAGUACCAC (((.((.(((.(((((..((((..------(((...........)))....((((.((....)).)))))))).))))).))).)).))).......... ( -36.10) >DroSec_CAF1 93714 94 - 1 CAGGCGGAGCUGUGGUGACCACCA------GCCAAGCUAACAGCGGCACAAGCGUGGUUCAUGCAACACGUGGAGCCACCGCAGCGGCUGCCAGCACCAC ..(((((.(((((((((.((((..------(((..((.....)))))....(((((...))))).....))))...)))))))))..)))))........ ( -42.00) >DroSim_CAF1 98884 94 - 1 CAGGCGGAGCUGUGGUGACCACCA------GCCAAGCUAACAGCGGCACAAGCGUGGUUCAUGCAACACGUGGAGCCACCGCAGCGGCUGCCAGCACCAC ..(((((.(((((((((.((((..------(((..((.....)))))....(((((...))))).....))))...)))))))))..)))))........ ( -42.00) >DroEre_CAF1 91338 94 - 1 CAGGCGGUGCUGUGGUGACCACCA------GCCAAGUUAACAGCGGCACGAGUGUGGUGCAUGCAACACGGGGAGCCACCGCAGCGGCUGCCAGCACCAC ..(((((((((((((((.((.((.------(((...........)))....((((.((....)).))))))))...))))))))).))))))........ ( -40.50) >DroYak_CAF1 98530 94 - 1 CAGGCGGUGCUGUGGUGACCACAA------GCCAAGUCAACAGCGGCACGAAUGUAGUUCAUGCAACACGAGGAGCCACUGCAGCUGCUGCUAGCACCAC .....(((((((((((........------))))......(((((((.....((((((....((..(....)..)).))))))))))))).))))))).. ( -31.70) >DroPer_CAF1 114449 97 - 1 CUGGUGGAGCUGUUCUGGCCACCAGCAGCAGCCAAAACAACAGCAACACAAAUGUGGUACAUGCUACACGUGGCGCCACAGCUGCAGCAGCCGGCGG--- ...((.(.((((((.(((...)))(((((.((..........))........((((((.((((.....))))..)))))))))))))))))).))..--- ( -32.60) >consensus CAGGCGGAGCUGUGGUGACCACCA______GCCAAGUUAACAGCGGCACAAGUGUGGUUCAUGCAACACGUGGAGCCACCGCAGCGGCUGCCAGCACCAC ..(((((.(((((((((.((((........(((...........)))....((((.((....)).))))))))...)))))))))..)))))........ (-27.90 = -29.23 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:06 2006