| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,306,008 – 5,306,108 |
| Length | 100 |
| Max. P | 0.730441 |
| Location | 5,306,008 – 5,306,108 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.03 |
| Mean single sequence MFE | -21.39 |
| Consensus MFE | -12.09 |
| Energy contribution | -13.90 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5306008 100 + 22407834 CUAACAACAAAACAUUAUGUCGAUUGUCUGCACGCUGGAACAGAAAGUGAACUUUUUCAAAGCGGCUGCAACGACCAAAAAUCUGUUGAUACUCAAAAAC------------ ....(((((.........((((.((((..((.((((.....((((((....))))))...)))))).))))))))........)))))............------------ ( -24.23) >DroVir_CAF1 32507 103 + 1 CACUU---AAAACAUUAUGUCGAUAGAAAGCCCGUUGGAGCGAAAAGUUAACUUUUUUCAUGAGACUGCAACAACUAAAAGUUUAUUUAUAUUUAAAAACAACA------AC .....---........((((.((((((......((((..((((((((....))))))((....))..))..))))......)))))).))))............------.. ( -11.70) >DroPse_CAF1 104609 100 + 1 ------UCGAAACAUUAUGUCGAUUGUUUGUACGCUGGAGCAAAAAGUGAACUUUUUCAAAGCGGCUGCAACGACCAAGAAUCUGUUGAUUCUGAAGAACAGCA------AC ------............((((.((((..((.((((...(.((((((....)))))))..)))))).))))))))..((((((....))))))...........------.. ( -23.80) >DroWil_CAF1 54866 112 + 1 UUAACAAAAAAACAUUAUGUCGAUUGUUUGCACGCUGGAACAGAAAGUGAACUUUUUUAAAGCGGCAGCAACAACAAAAAAUCUUUUGAUACUCAAGAACAACAAUAUUAAC .................(((.(.(((((.((.((((.....((((((....))))))...)))))))))))).))).......(((((.....))))).............. ( -19.20) >DroAna_CAF1 67471 98 + 1 --AAAAACAAAACAUUAUGUCGAUUGUGUGCACGCUGGAACAGAAAGUAAACAUUUUCAAAGCGGCUGCAACGACCAAGAAUCUUUUGAUACUCAAACAC------------ --.....(((((.(((..((((.(((((.((.((((......((((((....))))))..)))))))))))))))....))).)))))............------------ ( -20.80) >DroPer_CAF1 99663 100 + 1 ------UCGAAACAUUAUGUCGAUUGUGUGCACGCUGGAGCAAAAAGUGAACUUUUUCAAAGCGGCUGCAACGACCAAGAAUCUGCUGAUUCUGAAGAACAGCA------AC ------............((((.(((((.((.((((...(.((((((....)))))))..)))))))))))))))........(((((.(((....))))))))------.. ( -28.60) >consensus __AA__ACAAAACAUUAUGUCGAUUGUGUGCACGCUGGAACAAAAAGUGAACUUUUUCAAAGCGGCUGCAACGACCAAAAAUCUGUUGAUACUCAAAAACA_CA______AC ..................((((.(((((.((.((((.....((((((....))))))...)))))))))))))))..................................... (-12.09 = -13.90 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:03 2006