Locus 196

Sequence ID 2L_DroMel_CAF1
Location 591,380 – 591,482
Length 102
Max. P 0.535725
window293

overview

Window 3

Location 591,380 – 591,482
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -29.48
Consensus MFE -18.55
Energy contribution -20.26
Covariance contribution 1.71
Combinations/Pair 1.17
Mean z-score -1.68
Structure conservation index 0.63
SVM decision value 0.00
SVM RNA-class probability 0.535725
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 591380 102 + 22407834
UAGAUUAAACAUUUGACCGGUUGACAAACAUAUUGCCAGGGAAACGAAAACUAA-GGGGGCCCGGAACCCGGGGCCCGUAGCCCGGAAAGCGUGGAUAAUCCU
..(((((..(((.(..((((...((..............(....).........-.(((.(((((...))))).)))))...))))...).)))..))))).. ( -32.00)
>DroSec_CAF1 22646 100 + 1
UAGAUUAAACAUUUGACCGGUUGACAAACAUAUUGCCAG-GAAACGAAAACUA--GGGGGCCCGGAAUCCGGGGCCCGUAGCCCGGAAAGCGUGGGUAAUCCU
..(((((..(((.(..((((..................(-....).....(((--.(((.(((((...))))).))).))).))))...).)))..))))).. ( -35.30)
>DroSim_CAF1 21251 103 + 1
UAGAUUAAACAUUUGACCGGUUGACAAACAUAUUGCCAGGGAAACGAAAUUUAAGGGGGGCCCGGAAUCCCCUGCCCGUAGCCCGGAAAGCGUGGGUAAUCCU
..(((((..(((.(..(((((.............))).(((..(((.......((((((........))))))...)))..)))))...).)))..))))).. ( -27.32)
>DroEre_CAF1 23007 102 + 1
UAGAUUAAACAUUUGACCGGUUGACAAACAUAUUGCCAGGGAAACGCAAACUAA-GGGGUUCCGGAACUCGGAGCCCGUAACCCGGAAAGCGUGGGUAAUCCU
..(((((..(((.(..((((...((.......((((...(....))))).....-.((((((((.....))))))))))...))))...).)))..))))).. ( -33.40)
>DroAna_CAF1 23690 81 + 1
UAGAUUAAACAUUCGGCCGGUUGACAAACAUAUUGUCG-GGAAACAACAACA---------CCGGAGUCU------CGU------GAUAGCGUCACUAAUCCC
..(((((.........(((((((((((.....))))))-(....)......)---------)))).....------.((------(((...)))))))))).. ( -19.40)
>consensus
UAGAUUAAACAUUUGACCGGUUGACAAACAUAUUGCCAGGGAAACGAAAACUAA_GGGGGCCCGGAAUCCGGGGCCCGUAGCCCGGAAAGCGUGGGUAAUCCU
..(((((..(((.(..((((...((..............(....)...........(((.(((((...))))).)))))...))))...).)))..))))).. (-18.55 = -20.26 +   1.71)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:59 2006