Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,274,520 – 5,274,637 |
Length | 117 |
Max. P | 0.509565 |
Location | 5,274,520 – 5,274,637 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.65 |
Mean single sequence MFE | -42.05 |
Consensus MFE | -19.72 |
Energy contribution | -20.03 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.42 |
Mean z-score | -1.80 |
Structure conservation index | 0.47 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5274520 117 - 22407834 G---AUCUCUCACCCCGGAAAGCCGUUCGAAGGAACUGGAGACCAGUCUAGAGCAAAUGCAGCGUGCCUAUGAGGAUUGCGAGGACUACUGGCAAACGAAACUUAGCGAGGAGCGGCAGC .---.................(((((((...(((.((((...))))))).)))).......((...(((.((((..((((.((.....)).))))......))))...))).)))))... ( -31.00) >DroVir_CAF1 5194 120 - 1 GUCGUGCCACCACGCCGGAGACACGCUGCAAGGAGCUAGAAAACAGUUUGGAGCAAAUGCAGCGCGCUUACGAGGAUUGCGAGGAUUACUGGCAAACCAAACUAAGCGAGGAACGGCAAA (((((.((........(....).(((((((..(..(((((......)))))..)...)))))))((((((...((.((((.((.....)).)))).))....)))))).)).)))))... ( -43.40) >DroPse_CAF1 54440 117 - 1 C---AGGAGCCGCACCAGACAGCCGCUGCAAGGAGCUGGAGGGCAGUCUGGAGCAGAUGCAGCGCGCAUAUGAGGAAUGCGAGGAUUAUUGGCAAUCGAAGUUGGGCGAAGAGCGUCAGA .---.......((.((((((.(((.((.((......)).))))).)))))).)).(((((..(((.((.((...((.(((.((.....)).))).))...)))).)))....)))))... ( -40.70) >DroGri_CAF1 2375 120 - 1 GUCGAGCCACCACGCCGGAGACACGCUGCAAGGAGCUGGAGAAUAGUCUGGAGCAGAUGCAGCGUGCAUACGAGGAUUGCGAGGAUUACUGGCAGUCCAAGCUGAGCGAGGAGCGACAAA ((((..((....((((((.(.(((((((((..(..(..((......))..)..)...))))))))))......(((((((.((.....)).)))))))...))).))).))..))))... ( -52.60) >DroWil_CAF1 5541 117 - 1 A---AUCUAGCACACCGGAGACACGUUGCACGGAUUUGGAGGCCAGUUUGGAGCAAAUGCAACGUGCCUAUGAGGAAUGCGAGGAUUAUUGGCAAUCAAAGCUGAGCGAUGAACGGCAAA .---.....((.....(....).((((((.(((.(((((..((((((.....((....))..(((.((.....))...)))......))))))..))))).))).))))))....))... ( -32.20) >DroAna_CAF1 30293 117 - 1 G---GUCCCUCAGUCCUGAGAGCCGGUCGAAAGACCUGGAAGCCAGCUUGGAGCAGAUGCAGCGGGCCUACGAGGACUGCGAGGACUACUGGCAGUCGAAGCUCAGCGACGAGCGCCAGA (---(((((.(((((((.....((((((....)))).))..(((.(((....((....))))).))).....))))))).).))))).(((((..(((..((...))..)))..))))). ( -52.40) >consensus G___AGCCACCACACCGGAGACACGCUGCAAGGAGCUGGAGACCAGUCUGGAGCAAAUGCAGCGUGCCUACGAGGAUUGCGAGGAUUACUGGCAAUCGAAGCUGAGCGAGGAGCGGCAAA .......................(((((((..(..(((((......)))))..)...)))))))(((.......((((((.((.....)).))))))........)))............ (-19.72 = -20.03 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:52 2006