Locus 1952

Sequence ID 2L_DroMel_CAF1
Location 5,269,816 – 5,269,936
Length 120
Max. P 0.550892
window3160

overview

Window 0

Location 5,269,816 – 5,269,936
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.17
Mean single sequence MFE -35.02
Consensus MFE -27.36
Energy contribution -28.68
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -1.45
Structure conservation index 0.78
SVM decision value 0.03
SVM RNA-class probability 0.550892
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5269816 120 + 22407834
ACCUUCCCGAGGAUAUUGAUGAAGUCAGUAUGUUCCAGUUUAACGAACUGAUCCACUUGGAGUGCGUCAUCAAGGAAUCACUGAGGUUGUUUCCCUCAGCUCCGAUCAUUGGCCGAACGU
((.(((((((.(((.(((((((.....((((....((((((...)))))).(((....))))))).)))))))(((....((((((.......)))))).))).))).))))..))).)) ( -32.40)
>DroSim_CAF1 51608 120 + 1
ACCUUCCCGAGGACAUUGAUGAGAUCAGUAUGUUCCAGUUCAACGAACUGAUCCACUUGGAGUGUGUCAUCAAGGAAUCGCUGAGGCUGUUUCCCUCAGCUCCGAUCAUUGGCCGCACGU
......((((((((((...((....))..))))).((((((...)))))).....))))).((((((((....(((...(((((((.......))))))))))......))).))))).. ( -37.70)
>DroEre_CAF1 39877 120 + 1
ACCUUCCCGAAGACAUCGACGAAAUCAGUAUGUUCCAGUUCAACGAACUGAUCCAUUUAGAGAGUGUCAUCAAGGAAUCGCUGAGGAUGUUCCCCUCAGCUCCCAUCAUAGGCCGAAAAU
.((((((.((.((((((...(((((((((.((((.......)))).))))))...)))...)).)))).))..))))..(((((((.......)))))))..........))........ ( -29.00)
>DroYak_CAF1 49031 120 + 1
AUCUUCCCGAAGACGUUGAUGAAAUCAGUAUGUUCCAGUUCAACGAACUGGUCCAUUUGGAGUGUGUCAUCAAGGAAUCGCUGAGGCUGUUUCCCUCAGCACCGAUCAUUGGCAGAAAAU
.(((..((((.(((.(((((((..((...(((..(((((((...)))))))..)))...)).....))))))).)....(((((((.......))))))).....)).)))).))).... ( -41.00)
>consensus
ACCUUCCCGAAGACAUUGAUGAAAUCAGUAUGUUCCAGUUCAACGAACUGAUCCACUUGGAGUGUGUCAUCAAGGAAUCGCUGAGGCUGUUUCCCUCAGCUCCGAUCAUUGGCCGAAAAU
......((((.((..(((((((..(((((.((((.......)))).)))))(((....))).....)))))))(((...(((((((.......))))))))))..)).))))........ (-27.36 = -28.68 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:49 2006