Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,263,805 – 5,263,917 |
Length | 112 |
Max. P | 0.718475 |
Location | 5,263,805 – 5,263,917 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 76.23 |
Mean single sequence MFE | -24.69 |
Consensus MFE | -9.52 |
Energy contribution | -12.72 |
Covariance contribution | 3.20 |
Combinations/Pair | 1.21 |
Mean z-score | -1.92 |
Structure conservation index | 0.39 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5263805 112 - 22407834 AACAAUAACAAUCUCAAAACAGCUUUCUGUUAUCAGGAAGCCAAUUAUAUGGUUGGAUUAUAUCAAUUAUUGUGGUUGAGUGCUGUUGAGUUCUAUUCUUUUUUAUACUCGA .((((((((((((........((((((((....)))))))).........)))))(((...)))..)))))))..(((((((..(..(((.......)))..)..))))))) ( -24.43) >DroSec_CAF1 40523 101 - 1 AACAAUAACAAUCUCAAAACAGCUUUCUGUUAUCAGGAAGCCAAUUAUAUGGUUGGAUUAUUUCAAUUAUUGUGGUUGGGAGU-----------GUUUGUAUUUAUACUCAA ........(((((.(((....((((((((....))))))))........((((((((....))))))))))).))))).((((-----------((........)))))).. ( -27.90) >DroSim_CAF1 41937 112 - 1 AACAAUAACAAUCUGAAAACAGCUUUCUGUUUUUGGGAAGCCAAUUAUUUGGUUGGAUUAUUUCAAUUAUUGUGGUUGGGAGCUGUUGGGUUCUAUUCUUAUUUAUACUCAA ...........((..(((((((....)))))))..))...((((((((.((((((((....))))))))..))))))))(((((....)))))................... ( -26.70) >DroEre_CAF1 33857 108 - 1 AACAAUAACAAUGUCAAAACAGCUUUCUGUUAUCA----GUGAAUUAUACGGUUGGAUUCUCGCAACUAUAGUUACUGUGCUCAGCCAGAUUAGUUUGAUACUUAUACUGGA ...........(((((((....((..(((....((----((((....((..(((((.....).))))..)).))))))....)))..)).....)))))))........... ( -20.70) >DroYak_CAF1 42979 107 - 1 AACAAUAACAAUCGCAAAACAGCUUUCUGUUAUCA----ACCAAUUAUAUGGUUGGAUUAUUUCAAUUAUGGCUGCUGGGAUU-GUUAGGUUCUUUUGAUACAUACACUUGA ..(((((((((((.((...(((((....(((..((----((((......))))))((.....)))))...))))).)).))))-))))(..((....))..)......))). ( -23.70) >consensus AACAAUAACAAUCUCAAAACAGCUUUCUGUUAUCAGGAAGCCAAUUAUAUGGUUGGAUUAUUUCAAUUAUUGUGGUUGGGAGC_GUUAGGUUCUAUUCAUAUUUAUACUCGA .....................((((((((....))))))))((((((((((((((((....))))))))).))))))).................................. ( -9.52 = -12.72 + 3.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:46 2006