Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,262,930 – 5,263,032 |
Length | 102 |
Max. P | 0.923344 |
Location | 5,262,930 – 5,263,032 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -31.92 |
Consensus MFE | -22.74 |
Energy contribution | -23.70 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.15 |
Mean z-score | -1.76 |
Structure conservation index | 0.71 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5262930 102 + 22407834 AUUUACUUCUAUUGCAGCAAAGGCUGCAAUUGGCCAGAUUGC---------------AACGGCAGCAACUGCAACUGUGGCAUUGCCAUUUCUGCGCGCGCAUUACAAACUUGGCUC ..........((((((((....)))))))).((((((..(((---------------....)))((...((((...(((((...)))))...))))...)).........)))))). ( -30.90) >DroSec_CAF1 39722 102 + 1 AUUUACUUCUAUUGCAGCAACGGCUGCACUUGGCCAGCUUGC---------------AACGGCAGCAAGCGCAACUGCGGCAUUGCCAUUUCUGCGCGCGCAUUACAAACUUGGCUC ............((((((....))))))....(((.((((((---------------.......))))))((....)))))...((((....(((....))).........)))).. ( -31.82) >DroSim_CAF1 41150 102 + 1 AUUUACUUCUAUUGCAGCAACGGCUGCACUUGGCCAGCUUGC---------------AACGGCAGCAACUGCAACUGCGGCAUUGCCAUUUCUGCGCGCGCAUUACAAACUUGGCUC ............((((((....))))))...((((((.(((.---------------...(((((...((((....))))..))))).....(((....)))...))).).))))). ( -29.90) >DroEre_CAF1 32921 93 + 1 AUUUACUUCUAUUGCAGCCGAGGCUGCACUUGGUCAGGUUG------------------------CAACUGCAACUGUGGCAUUGCCAUUUCUGCGCGCGCAUUGCAAACUUGGCUC ............((((((....))))))...((((((((((------------------------(((..(((...(((((...)))))...)))(....).)))).))))))))). ( -32.60) >DroYak_CAF1 42007 117 + 1 AUUUACUUCUAUUGCAGCAAAGGCUGCACUUGGCCAGCUUGCCACUGAAGCAACUGCAACUGCGGCAACUGCAACUGCUGCAUUGCCAUUUCUGCGCGCGCAUUACAAACUUGGCUC ............((((((....))))))...(((((((((.......))))....((((.(((((((........)))))))))))......(((....))).........))))). ( -34.40) >consensus AUUUACUUCUAUUGCAGCAAAGGCUGCACUUGGCCAGCUUGC_______________AACGGCAGCAACUGCAACUGCGGCAUUGCCAUUUCUGCGCGCGCAUUACAAACUUGGCUC ............((((((....))))))...((((((.(((...................(((((...((((....))))..))))).....(((....)))...))).).))))). (-22.74 = -23.70 + 0.96)
Location | 5,262,930 – 5,263,032 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -38.36 |
Consensus MFE | -26.10 |
Energy contribution | -27.02 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.07 |
Mean z-score | -2.70 |
Structure conservation index | 0.68 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.923344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5262930 102 - 22407834 GAGCCAAGUUUGUAAUGCGCGCGCAGAAAUGGCAAUGCCACAGUUGCAGUUGCUGCCGUU---------------GCAAUCUGGCCAAUUGCAGCCUUUGCUGCAAUAGAAGUAAAU (.((((.(.((((((((.(((.((((.....(((((......)))))..)))))))))))---------------)))).)))))).((((((((....)))))))).......... ( -38.00) >DroSec_CAF1 39722 102 - 1 GAGCCAAGUUUGUAAUGCGCGCGCAGAAAUGGCAAUGCCGCAGUUGCGCUUGCUGCCGUU---------------GCAAGCUGGCCAAGUGCAGCCGUUGCUGCAAUAGAAGUAAAU (.((((.((((((((((.((((((((...((((...))))...)))))).....))))))---------------)))))))))))...((((((....))))))............ ( -41.30) >DroSim_CAF1 41150 102 - 1 GAGCCAAGUUUGUAAUGCGCGCGCAGAAAUGGCAAUGCCGCAGUUGCAGUUGCUGCCGUU---------------GCAAGCUGGCCAAGUGCAGCCGUUGCUGCAAUAGAAGUAAAU (.((((.((((((((((.(((.((((.....(((((......)))))..)))))))))))---------------)))))))))))...((((((....))))))............ ( -40.10) >DroEre_CAF1 32921 93 - 1 GAGCCAAGUUUGCAAUGCGCGCGCAGAAAUGGCAAUGCCACAGUUGCAGUUG------------------------CAACCUGACCAAGUGCAGCCUCGGCUGCAAUAGAAGUAAAU ..((((..(((((.........)))))..))))..(((..(((((((....)------------------------))).)))......((((((....))))))......)))... ( -29.90) >DroYak_CAF1 42007 117 - 1 GAGCCAAGUUUGUAAUGCGCGCGCAGAAAUGGCAAUGCAGCAGUUGCAGUUGCCGCAGUUGCAGUUGCUUCAGUGGCAAGCUGGCCAAGUGCAGCCUUUGCUGCAAUAGAAGUAAAU ..((((..(((((.........)))))..))))..((((((.((.((....)).)).)))))).(((((((..((((......))))..((((((....))))))...))))))).. ( -42.50) >consensus GAGCCAAGUUUGUAAUGCGCGCGCAGAAAUGGCAAUGCCGCAGUUGCAGUUGCUGCCGUU_______________GCAAGCUGGCCAAGUGCAGCCUUUGCUGCAAUAGAAGUAAAU (.((((.((((((..(((....))).....((((((((.......))).))))).....................)))))))))))...((((((....))))))............ (-26.10 = -27.02 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:45 2006