Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,252,204 – 5,252,313 |
Length | 109 |
Max. P | 0.689432 |
Location | 5,252,204 – 5,252,313 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.41 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -22.74 |
Energy contribution | -25.34 |
Covariance contribution | 2.60 |
Combinations/Pair | 1.12 |
Mean z-score | -1.56 |
Structure conservation index | 0.73 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689432 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5252204 109 - 22407834 AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUCAAAUGGGUUUCGUUUGGGCCCCACUUUUUCGUUUCCCUCGAUUCGUUCACUGGUCUC---CACGACCAGUGUCCAGUG----- .....(((((...((((((....))))))........((((..((....))..)))).............)))))...(..((((((((..---...))))))))..)....----- ( -33.80) >DroSec_CAF1 29054 85 - 1 AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUCAAAUGGGCUUC-------------------GUUUCCCUCGAUUCGUUCGCUGGUCUC---CACGACCAGUGUC---------- .....((((....((((((....)))))).........(((....-------------------....)))))))......((((((((..---...))))))))..---------- ( -26.20) >DroSim_CAF1 30489 109 - 1 AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUCAAAUGGGCUUCGUUUGGGCCCCACAUUUUCGUUUCCCUCGAUUCGUUCGCUGGUCUC---CACGACCAGUGUCCAGUG----- .....(((((...((((((....)))))).........((((((.....))))))...............)))))...(..((((((((..---...))))))))..)....----- ( -35.70) >DroEre_CAF1 21927 117 - 1 AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUGGAAAUGGGCUUCGUUUGGGCUCCACUUUUUCGUUUCCCUCGAUGCGUUCACUGGUCUCCUCCACGUCCAGUGUCCAGUGUCCGU ......((.((((.(((((..((((.((....((((.(((((((.....)))).))).))))..)).))))..)))))...((((((.(........).))))))..))))...)). ( -36.10) >DroYak_CAF1 31015 94 - 1 AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUGAAAUGGGCUUCGUUUGGGCCCCACAACUUCGUUUCCCUCGAUUCGUACACUGGCCAC---CAC-------------------- ......(.((.((((((((..((((.((((.(((....((((((.....))))))..))).)).)).))))..)))..))))))).)....---...-------------------- ( -23.80) >consensus AAAUCUCGAGCUGUGCAUCUUGGGAUGCAAUUUCAAAUGGGCUUCGUUUGGGCCCCACAUUUUCGUUUCCCUCGAUUCGUUCACUGGUCUC___CACGACCAGUGUCCAGUG_____ .....(((((...((((((....)))))).........((((((.....))))))...............)))))......((((((((........))))))))............ (-22.74 = -25.34 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:28 2006