Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,249,891 – 5,249,982 |
Length | 91 |
Max. P | 0.668115 |
Location | 5,249,891 – 5,249,982 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 72.51 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -11.97 |
Energy contribution | -12.30 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.35 |
Structure conservation index | 0.47 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.668115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5249891 91 + 22407834 UGGGAAACCAAGGAGACACAACCUGGUCAGGAUGCACUGGCAGAAAUUGU--------AGCUA-UUGUAGUCAACAAAUGGUUGUGUUUUCAAAAAGAGC (((....))).((((((((((((..(((((......))))).....((((--------.((((-...))))..))))..))))))))))))......... ( -32.50) >DroSec_CAF1 26739 91 + 1 UGGGAAACCAAGGAGACACAACCUGGUCAGGAUGCACUGGCCGAAAUUGU--------AGCUA-CUGUUGUCAACAAAUGUUUAUAUUUUCAACAAGAGC (((....))).(....)((((..(((((((......)))))))...))))--------.(((.-.(((((.....(((((....))))).)))))..))) ( -25.10) >DroEre_CAF1 19571 90 + 1 UGGGAAACCAAGGAGACACAACCCGGUCAAGAUGCACUGGCAGAAAAACUAUUGAUGUAGCUAACACUUGGUAA----------UACCUUCCAAGGGAGU (((....))).(....)....(((.(((((..(((....))).........)))))...........((((...----------......)))))))... ( -18.40) >consensus UGGGAAACCAAGGAGACACAACCUGGUCAGGAUGCACUGGCAGAAAUUGU________AGCUA_CUGUUGUCAACAAAUG_UU_UAUUUUCAAAAAGAGC (((....))).(....)........(((((......)))))........................................................... (-11.97 = -12.30 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:25 2006