Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,245,673 – 5,245,782 |
Length | 109 |
Max. P | 0.605627 |
Location | 5,245,673 – 5,245,782 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 83.12 |
Mean single sequence MFE | -31.70 |
Consensus MFE | -21.92 |
Energy contribution | -22.25 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.69 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5245673 109 + 22407834 GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUACACACUUUAAAAAAUCAAUUUUCG----------ACUUGCAUUUAA ........(((((((....(((((((((.....)))))))(((((((((....)))).))))).................................)----------)...))))))). ( -26.30) >DroSec_CAF1 22567 118 + 1 GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUGCACACUUGGAAAAAUCAAUU-UUGACCAUUCGGGAUUUGAAUUUAA .(((((.((((((((......(((((((.....)))))))(((((((((....)))).))))).........))))...(((..(((.....)-))..))).)))))))))........ ( -34.60) >DroSim_CAF1 23738 119 + 1 GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUGCACACUUGGAAAAAUCAAUUUUUGACCAUUCGGUAUUUGGAUUUAA .((((((((((((((......(((((((.....)))))))(((((((((....)))).))))).........))))...(((.((((.....))))..))).))))).....))))).. ( -33.00) >DroEre_CAF1 14835 119 + 1 GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUCCACACUUCAAGAAAUCAAUGUUGGCCCAUUAGGGAUUUGGAUUUAA .((((...((((........((((((((.....))))))))((((((((....)))).))))))))....))))..........(((((........(((....))).....))))).. ( -32.62) >DroYak_CAF1 24630 119 + 1 GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUCCACACUUCAAAAAAUCUAUGUUUGACCAUUCGGGAUUUGGAUUUAA .((((...((((........((((((((.....))))))))((((((((....)))).))))))))....))))..........(((((((..(((((....)))))...))))))).. ( -32.70) >DroAna_CAF1 3693 98 + 1 GGCAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGACUCGUCUCCCAAUCACUGGAAGAA-UAGUGUCUAGGC-------------------- (((((......)))))....((((((((.....))))))))(((.((((....))))..((((.(.(((.(((.....))).))).-..).)))).)))-------------------- ( -31.00) >consensus GGGAUCACUGAGUGCCACUUCAAUUUGUUUACAACAAGUUGGCCCGCUGAUUGCAGCUGGGCCUCAUUUCAUACACACUUGAAAAAAUCAAUUUUUGACCAUUCGGGAUUUGGAUUUAA .........(((((.......(((((((.....)))))))(((((((((....)))).)))))............)))))....................................... (-21.92 = -22.25 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:20 2006