Locus 1936

Sequence ID 2L_DroMel_CAF1
Location 5,243,313 – 5,243,430
Length 117
Max. P 0.558603
window3128

overview

Window 8

Location 5,243,313 – 5,243,430
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 69.93
Mean single sequence MFE -21.57
Consensus MFE -12.16
Energy contribution -13.85
Covariance contribution 1.69
Combinations/Pair 1.16
Mean z-score -1.48
Structure conservation index 0.56
SVM decision value 0.05
SVM RNA-class probability 0.558603
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5243313 117 + 22407834
AUUGAAUGGCUCCCAGCCAAAUGGCAAAAAUGUUAGGCCUCUAUGACACUAGGUCGAAAACAUAGUAGGCUAUUCUAAUGUAAAUUCAAACACUUCCAUAUAGUAACAUAUUUUUUA
...((((((((..(.(((....)))....(((((.(((((..........)))))...))))).)..)))))))).......................................... ( -23.30)
>DroSec_CAF1 20207 114 + 1
AUUGAAUGGCUGCCAGCCAAAUGGCAAAAAAGUUAGGCCUCUAUGACACUACGUCUAAAACAGAGGAGGCUGUUCUAAAGUAAAUUCAAACACUCCCAUAUAGUAACAUAU---UUA
.((((((.(((((((......)))).....((...(((((((..(((.....))).........)))))))...))..)))..))))))......................---... ( -23.50)
>DroEre_CAF1 13212 90 + 1
AUUCAAUGGCUCCCAGCCAAUUGGCAAAAAAGUUAAGCCAUUAUGACACUAGGCCCAAAAG-CGGAAGGUUAUACAAAA-----UU----AAAUCCAGC-U----------------
.......((((....(((....)))......((((........))))....))))....((-((((...(((.......-----.)----)).))).))-)---------------- ( -15.10)
>DroYak_CAF1 22983 96 + 1
AUUGAAUGGCUCCCAGCCAAAUGGCGAAAAAGUUAAGCCUGUAUGACACUAGGCCUAAAAG-GGGAAGGAUAUCCUUAA----GUUCAAUCAAUCCAGUAU----------------
(((((((...((((.(((....))).......(((.(((((........))))).)))..)-)))((((....))))..----)))))))...........---------------- ( -24.40)
>consensus
AUUGAAUGGCUCCCAGCCAAAUGGCAAAAAAGUUAAGCCUCUAUGACACUAGGCCUAAAAC_GAGAAGGCUAUUCUAAA____AUUCAAACAAUCCAAUAU________________
...((((((((..(.(((....))).......(((((((............)))))))......)..)))))))).......................................... (-12.16 = -13.85 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:19 2006