Locus 1934

Sequence ID 2L_DroMel_CAF1
Location 5,237,750 – 5,237,843
Length 93
Max. P 0.612055
window3126

overview

Window 6

Location 5,237,750 – 5,237,843
Length 93
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 85.05
Mean single sequence MFE -23.64
Consensus MFE -15.70
Energy contribution -15.78
Covariance contribution 0.08
Combinations/Pair 1.11
Mean z-score -1.89
Structure conservation index 0.66
SVM decision value 0.16
SVM RNA-class probability 0.612055
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5237750 93 - 22407834
UAGUGUGCAUGCAAAAGGGCCCUGCAAUUAUGCAGG-----CCAUUCCGAUUCUCCUGAUACCUCCCCACCAUAUGUACGUA----CGUACGUAUUCCCCAU
..(((((....))....((((.((((....))))))-----))........................))).((((((((...----.))))))))....... ( -20.50)
>DroSec_CAF1 15027 102 - 1
UAGUGUGCAUGCAAAAGGGCCCUGCAAUUAUGCAGGCCAGGCCAUUCCGAUUCUCCCGAUAUCUCCCCACCAUAUGUACGUACAUACGUACGUAUGCCCCAU
..(((.((((((....(((.((((((....))))))............(((((....)).)))..))).......((((((....))))))))))))..))) ( -28.80)
>DroSim_CAF1 15917 97 - 1
UAGUGUGCAUGCAAAAGGGCCCUGCAAUUAUGCAGG-----CCAUUCCGAUUCUCCCGAUACCUCCCCACCAUAUGUACGUACGUACGUACGUAUGCCCCAU
..(((.((((((....(((.((((((....))))))-----......((.......)).......))).......((((((....))))))))))))..))) ( -27.90)
>DroEre_CAF1 7664 85 - 1
UAGUGUGCAUGCAAAAGGGCCCUGCAAUUAUGCAGG-----CUAUUCCGAUUCUCCCCAUACCUCCCCACCAUAUGCAC------------GUAUUCCACAU
....(((((((.....(((.((((((....))))))-----.......(........)......))).....)))))))------------........... ( -19.20)
>DroYak_CAF1 17024 85 - 1
UAGUGUGCAUGCAAAAGGGCCCUGCAAUUAUGCAGG-----CUAUUCCGAUUCUCCCGGUAUCUUGCCACCAUAUGUAC------------GUAGACCCCAU
....(((((((......(((((((((....))))))-----.....(((.......)))......)))....)))))))------------........... ( -21.80)
>consensus
UAGUGUGCAUGCAAAAGGGCCCUGCAAUUAUGCAGG_____CCAUUCCGAUUCUCCCGAUACCUCCCCACCAUAUGUACGUA____CGUACGUAUGCCCCAU
....(((((((.....(((.((((((....))))))...........((.......)).......)))....)))))))....................... (-15.70 = -15.78 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:17 2006