Locus 1931

Sequence ID 2L_DroMel_CAF1
Location 5,236,173 – 5,236,271
Length 98
Max. P 0.745098
window3120

overview

Window 0

Location 5,236,173 – 5,236,271
Length 98
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 83.18
Mean single sequence MFE -23.87
Consensus MFE -17.96
Energy contribution -17.27
Covariance contribution -0.69
Combinations/Pair 1.22
Mean z-score -1.74
Structure conservation index 0.75
SVM decision value 0.46
SVM RNA-class probability 0.745098
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5236173 98 - 22407834
AAAACAAUUGUCCGGCAUUCUAUUGGGGGCAUAUUAGUUUGAAAAAACUUCAAUUGCUAUUUGAAUGGCUUUUUCAUGG--------------------UAGGAAGAUUAAGGAUAAC
.......(((((((.(((((.......((((....(((((....))))).....))))....))))).)((((((....--------------------..))))))....)))))). ( -23.70)
>DroSec_CAF1 13429 96 - 1
AAAACAAUUGUCCGGCAUUCUAUUGG-GGCAUAUUAGUUUGAA-AAACUUCAAUUGCCAUUUGAAUGGCUUUUUCAUGG--------------------UGGAAAGAUUAAGGAUAAA
.......(((((((.(((((......-((((....((((....-.)))).....))))....))))).)((((((....--------------------..))))))....)))))). ( -23.40)
>DroSim_CAF1 14311 96 - 1
AAAACAAUUGUCCGGCAUUCUAUUGG-GGCAUAUUAGUUUGAA-AAACUUCAAUUGCCAUUUGAAUGGCUUUUUCAUGG--------------------UGGAAAGAUUAAGGAUAAA
.......(((((((.(((((......-((((....((((....-.)))).....))))....))))).)((((((....--------------------..))))))....)))))). ( -23.40)
>DroYak_CAF1 15392 116 - 1
AAAACAAUUGUUUGGCAUUCUAUUGG-GGUAUAUUAGUUUGAA-AAACUUCAAUUGCCAUUCGAAUGGCUUUGUCUUGGCACUUUAGAAAGUGGUAAUCUAGGAGGAUGAAGGAUUAC
....((.(((..(((((....(((((-(((.............-..)))))))))))))..))).)).(((..(((((.(((((....))))).))........)))..)))...... ( -24.96)
>consensus
AAAACAAUUGUCCGGCAUUCUAUUGG_GGCAUAUUAGUUUGAA_AAACUUCAAUUGCCAUUUGAAUGGCUUUUUCAUGG____________________UAGAAAGAUUAAGGAUAAA
.......(((((((.(((((.......((((....(((((....))))).....))))....))))).)((((((..........................))))))....)))))). (-17.96 = -17.27 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:11 2006