Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 577,292 – 577,385 |
Length | 93 |
Max. P | 0.667671 |
Location | 577,292 – 577,385 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -32.86 |
Consensus MFE | -26.80 |
Energy contribution | -26.48 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.45 |
Structure conservation index | 0.82 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667671 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 577292 93 - 22407834 GGCUCCCUACGAACAGGGGUAUAUACUAUGUGCCUAAGAGGUCUGACCCGGUCUAGCCUCUUGGACAGUCGUUCUAGCCGGGCUUGUUAUGCC ((((....((((....((((((((...))))))))(((((((..(((...)))..)))))))......))))...)))).(((.......))) ( -31.50) >DroSec_CAF1 8800 91 - 1 GGCUCCCUACGAGCUGGGGUCUAUACUAUGU--CUAAGAGGUCUGACCCGGUCUAGCCUCUUGGACAGUCGUUCUAGCCGGGCUUGUUAUGCC (((.....(((((((.((.(....((..(((--(((((((((..(((...)))..))))))))))))...))...).)).)))))))...))) ( -40.10) >DroSim_CAF1 6189 91 - 1 GGCUCCCUACGAGCAGGGGUCUAUACUAUGU--CUAAGAGGUCUGACCCGGUCUAGCCUCUUGGACAGUCGUUCUAGCCGGGCUUGUUAUGCC (((.....((((((...((.(((.((..(((--(((((((((..(((...)))..))))))))))))...))..)))))..))))))...))) ( -38.00) >DroEre_CAF1 8797 91 - 1 GGCUCCCUACAAGUAAGGGUCUAUACCAUGU--CUGAAAGGUCUGACCCGGUCUAGCCUCUUGGGCAGUCGUUCUAGCCGGGCGUGUUAUGCC ((((((((.......)))).........(((--(..(.((((..(((...)))..)))).)..))))........)))).(((((...))))) ( -27.60) >DroYak_CAF1 8701 91 - 1 GGCUCCCUACACGUAAGGGUCUAUACCAUGU--CUGAAAGGUCUGACCCGGUCUAGCCUCUUGGGCAGUCGUUGUAGCCGGGCUCGUUAUGCC (((((.(((((((...((.......)).(((--(..(.((((..(((...)))..)))).)..))))..)).)))))..)))))......... ( -27.10) >consensus GGCUCCCUACGAGCAGGGGUCUAUACUAUGU__CUAAGAGGUCUGACCCGGUCUAGCCUCUUGGACAGUCGUUCUAGCCGGGCUUGUUAUGCC ((((((((.......)))).........(((..(((((((((..(((...)))..))))))))))))........)))).(((.......))) (-26.80 = -26.48 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:54 2006