Locus 1929

Sequence ID 2L_DroMel_CAF1
Location 5,232,516 – 5,232,610
Length 94
Max. P 0.800373
window3117

overview

Window 7

Location 5,232,516 – 5,232,610
Length 94
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.90
Mean single sequence MFE -20.17
Consensus MFE -12.42
Energy contribution -13.42
Covariance contribution 1.00
Combinations/Pair 1.18
Mean z-score -1.85
Structure conservation index 0.62
SVM decision value 0.61
SVM RNA-class probability 0.800373
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5232516 94 - 22407834
---------------------UGAGU---UAUAUUGUUAUUCACAGGCAGCACUUCCUCUCGAGCUGUCGCCUUGUGAUUAACUACAGAUUAUUCCAUUAAUUCUUAAUCAAAU--GGCA
---------------------...((---(((...((((.((((((((.(((.(((.....))).))).))).))))).))))....(((((.............)))))..))--))). ( -23.12)
>DroSec_CAF1 9788 99 - 1
---------------------UGAGUUGUUACAUUGUUAUUCACAGGCAGCACUUCCUCUCGAGCUGUCGCCUCGUGAUUAACUACAGAUUAUUCCAUUAAUUCUAAAUCAAAUGUGGCA
---------------------.....(((((((((((((.((((((((.(((.(((.....))).))).)))).)))).))))....(((((......)))))........))))))))) ( -26.50)
>DroSim_CAF1 10706 96 - 1
---------------------UGAGU---UACAUUGUUAUGCACAGGCAGCACUUCCUCUCGAGCUGUCGCCUCGUGAUUAACUACAGAUUAUUCCAUUAAUUCUAAAUCAAAUGUGGCA
---------------------...((---((((((((((..(((((((.(((.(((.....))).))).)))).)))..))))....(((((......)))))........)))))))). ( -23.90)
>DroEre_CAF1 2591 89 - 1
-----------------------UGU-----UAUUGUUAUUUACU-AUAGCACUUCCUUUCGAGCCGUCGUCCCGUGAUCAACUACAGAUUAUUCCACUAACUCUUAAUCAAAC--CACA
-----------------------(((-----(((.((.....)).-)))))).........(((..((.(....((((((.......)))))).).))...)))..........--.... (  -8.20)
>DroYak_CAF1 11670 115 - 1
AACACAUCUUUGGUUGAUGUUUCAGU---UACAUUGUUAUUCAUAGGCAUCACUUCCUUUCGAGCUGUCGCCCCGUGAUCAACUACAGAUUAUUCCAUUUAUUCUUAAUCAAAU--AGCA
...(((((.......)))))....((---((....(((..((((.(((..((.(((.....))).))..)))..))))..)))....(((((.............)))))...)--))). ( -19.12)
>consensus
_____________________UGAGU___UACAUUGUUAUUCACAGGCAGCACUUCCUCUCGAGCUGUCGCCUCGUGAUUAACUACAGAUUAUUCCAUUAAUUCUUAAUCAAAU__GGCA
...................................((((.((((((((..((.(((.....))).))..)))).)))).))))....(((((.............))))).......... (-12.42 = -13.42 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:09 2006