Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,232,029 – 5,232,149 |
Length | 120 |
Max. P | 0.551476 |
Location | 5,232,029 – 5,232,149 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.80 |
Mean single sequence MFE | -36.08 |
Consensus MFE | -28.86 |
Energy contribution | -29.50 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.07 |
Mean z-score | -1.46 |
Structure conservation index | 0.80 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5232029 120 + 22407834 CCCGAUGGAGUUUCGUUUUUGGGCCGGCAGGAAGCUGCAUUUACAUAUGCCCAAGGAUGCAUAUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUCACUUGCCCAGCCCCACAGC ..(((.......))).....((((.((((((..(((((....((((((((........)))))))))).)))..(((((((.....))))))).........))))))..))))...... ( -36.30) >DroSec_CAF1 9341 103 + 1 CCCGAUGGAGUUUCGUU-UUGGGCCGGCAGGAAGCUGCAUUUACAU----------------AUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUCACUUGCCCAGCCCCACAGC ..(((.......)))..-..((((.((((((..(((((((......----------------..)))).)))..(((((((.....))))))).........))))))..))))...... ( -30.60) >DroSim_CAF1 10271 103 + 1 CCCAAUGGAGCUUCGUU-UAGGGCCGGCAGGAAGCGGCAUUUACAU----------------AUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUCACUUGCCCAGCCCCACAGC .........(((..((.-..((((.((((((..(((.(((......----------------))))))(((...(((((((.....))))))).....))).))))))..)))).))))) ( -29.10) >DroEre_CAF1 2162 107 + 1 -----------UUCAUU-UUGGGCCGGCAGGAAGCCGCAUUUACAUAUGCCCGAG-CUGCAUGUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCACUGCACUUGCCCAGCCCCACAGC -----------......-..((((.((((((..(((((....((((((((.....-..))))))))))).))..(((((((.....))))))).........))))))..))))...... ( -36.60) >DroYak_CAF1 11164 118 + 1 GCUGAUGGCUUUUCAUUUUUGGGCCGGCAGGAAGCUGCAUUUACAUACGCUCCAG-AUGCAUGUGCGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUUACUUGCCC-GCCCCACAGC ((((((((....))))....((((.((((((....................((((-((((((((((....))))))))))))))..(((....)))......)))))).-))))..)))) ( -47.80) >consensus CCCGAUGGAGUUUCGUU_UUGGGCCGGCAGGAAGCUGCAUUUACAUA_GC_C_AG__UGCAUAUGUGCGAGUACGUGUAUCUGGCAGAUACAUAUCAUUUCACUUGCCCAGCCCCACAGC ....................((((.((((((..(((((....((((((((........))))))))))).))..(((((((.....))))))).........))))))..))))...... (-28.86 = -29.50 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:08 2006