Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,231,836 – 5,231,949 |
Length | 113 |
Max. P | 0.728269 |
Location | 5,231,836 – 5,231,949 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 94.22 |
Mean single sequence MFE | -28.20 |
Consensus MFE | -24.63 |
Energy contribution | -24.44 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.70 |
Structure conservation index | 0.87 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5231836 113 + 22407834 ACGGCAUACAAUCCACUCAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCA-ACGGCC---GGCAGCAGUUAGCAAAGGAGCUGGAAAGCCAGAGAGAUGAAGGAGAGCCA ..(((................((((.((((((((.((......(((.......(((.-......---))).((.....))...)))(((....)))..)).))))))))))))))). ( -27.89) >DroSec_CAF1 9150 114 + 1 ACGGCAUACAAUCCACUAAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCAAACGGCC---AGCAGCAGUUAGCAAAGGAGCUGGAAAGCCACAGAGAUGAAGGAGAGCCA ..(((.((........))...((((.((((((((.........(((.......(((....))).---....((.....))...)))(((....))).....))))))))))))))). ( -25.60) >DroSim_CAF1 10080 114 + 1 ACGGCAUACAAUCCACUCAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCAAACGGCC---AGCAGCAGUUAGCAAAGGAGCUGGAAAGCCAGCGAGAUGAAGGAGAGCCA ..(((................((((.((((((((.........(((.......(((....))).---....((.....))...)))(((((....))))).))))))))))))))). ( -29.99) >DroEre_CAF1 1974 116 + 1 ACGGCACACAGUCCACUCAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCA-ACGGCCAUCAGCAGCAGUUAGCAAAGGAGCUGGAAAGUCUGAAAGAUGAAGGAGAGCCA ..(((....((....))....((((.((((((((.(((.((..((((...((.((.(-((.((........)).))).))....))..))))...))))).))))))))))))))). ( -29.30) >consensus ACGGCAUACAAUCCACUCAAAUUUCACUUCAUUUAUCACGAAAUCCAUCAUCAGCCA_ACGGCC___AGCAGCAGUUAGCAAAGGAGCUGGAAAGCCAGAGAGAUGAAGGAGAGCCA ..(((................((((..............))))(((.(((((.(((....)))........((..(((((......)))))...))......))))).)))..))). (-24.63 = -24.44 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:07 2006