Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,231,199 – 5,231,318 |
Length | 119 |
Max. P | 0.585252 |
Location | 5,231,199 – 5,231,318 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.32 |
Mean single sequence MFE | -25.86 |
Consensus MFE | -20.70 |
Energy contribution | -21.38 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.13 |
Mean z-score | -1.47 |
Structure conservation index | 0.80 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5231199 119 + 22407834 AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGUUGGUGAGUGGUUCCCAUAAAAGUUAGAAUAUGUCCAGCAACAAAGCGAGUGUGUAUUAAAA-AUCAUUUUU ((((((((((..(((.(((..(((((((((((((((...........)))))))))))((((..((....))..)))).))))..))))))..))).))).)))).....-......... ( -29.60) >DroSec_CAF1 8525 108 + 1 AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGUUGGUGAGUGGGUACCAUAAAAGUUAGAAUA-----------GAAGCGAGUGUGUAUAAAAA-AUCAUAUUU ((((((((((....(((((..(((.(((((((((((...........)))))))))))(....)......)))...)))-----------)).))).))).)))).....-......... ( -27.50) >DroSim_CAF1 9453 108 + 1 AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGUUGGUGAGUGGGUACCAUAAAAGUUAGAAUA-----------GAAGCGAGUGUGUAUCAAAA-AUCAUAUUG ((((((((((....(((((..(((.(((((((((((...........)))))))))))(....)......)))...)))-----------)).))).))).)))).....-......... ( -26.90) >DroEre_CAF1 1331 118 + 1 AUGCCGCCGCGCUGUCUGUGCGACACACUUACCAACCAACAACAAAACUUGGUGAGUGGGUCCAAUAAAAGUUAGAAUAUGCCCACUAACAAAGCGAGUAUA--CCAAAAAAGCACAUUU (((((((.((((.....))))(((.((((((((((.............)))))))))).)))........(((((..........)))))...))).)))).--................ ( -30.72) >DroYak_CAF1 10346 107 + 1 AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGCUGGUGA------------AAAGUUAGAAUAUCUCCACCAACAAAGCGCCUAUAUAUCCAAA-AUGAUAUUU ........((((((((.....)))...(((((((...............))))))------------)........................)))))....(((((....-..))))).. ( -14.56) >consensus AUGCCGCCGUGCUGUCUGUGCGACACAUUUACCAACCAACAACAAAAGUUGGUGAGUGGGUACCAUAAAAGUUAGAAUAU__CCA__AACAAAGCGAGUGUGUAUCAAAA_AUCAUAUUU ((((((((((((.....)))))...(((((((((((...........)))))))))))...................................))).))))................... (-20.70 = -21.38 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:06 2006