Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,231,044 – 5,231,159 |
Length | 115 |
Max. P | 0.901626 |
Location | 5,231,044 – 5,231,159 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.29 |
Mean single sequence MFE | -31.72 |
Consensus MFE | -21.44 |
Energy contribution | -22.16 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.07 |
Mean z-score | -2.31 |
Structure conservation index | 0.68 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901626 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5231044 115 + 22407834 UAUAGCAAUAUUAUUUUAUAUGAUAUGCACAUACGGCCAAAUGAGCAAUACGUGCCAAUGUGCGUUGUCAUUGGCUCUCGACUUGCGAUUCGC-----GCGAUUCUCAUUGUGCGGCUAA ....(((.((((((.....)))))))))......((((......((((..((.(((((((........)))))))...))..)))).....((-----(((((....))))))))))).. ( -35.80) >DroSec_CAF1 8392 97 + 1 UAUAGCAAUAUUAUUUGAUAUGAUAUGCACAUACGGCCAAAUGAGCAAUACGUGCCAAUGUGCGUUGUCAU------------------UCGC-----GCGAUUCUCAUUGUGCGGCUAA ..((((.............(((((((((((((..(((...((((....).)))))).))))))).))))))------------------.(((-----(((((....)))))))))))). ( -30.00) >DroSim_CAF1 9319 97 + 1 UAUAGCAAUAUUAUUUGAUAUGAUAUGCACAUACGGCCAAAUGAGCAAUACGUGCCAAUGUGCGUUGUCAU------------------UCGC-----GCGAUUCUCAUUGUGCGGCUAA ..((((.............(((((((((((((..(((...((((....).)))))).))))))).))))))------------------.(((-----(((((....)))))))))))). ( -30.00) >DroEre_CAF1 1181 113 + 1 UAUAGCAGUAUUAUUUUAUAUGAUAUGCACAUAUGGCCAAAUGAGCAAUACGUGCCAAUGUGCGUUGUCAUCGACUCUCGACUUGCGACUCUCGAU-------UCUCAUUGUGCGGCUAA ..((((.((((.........((((((((((((.((((...((((....).)))))))))))))).)))))((((...(((.....)))...)))).-------.......)))).)))). ( -29.60) >DroYak_CAF1 10189 120 + 1 UAUAGCAAUAUUAUUUUAUACGAUAUGCACAUACGGCCAAAUGAGCAAUACGUGCCAAUGUGCGUUGUCAUGGGCUCUCAACGUGCGAUUCGCGAUUCGCGGUUCUUAUUGUGCGGCUAA ..((((.((((..(.....)..))))(((((.(..(((....((((....((((.((((....)))).)))).)))).......((((........)))))))..)...))))).)))). ( -33.20) >consensus UAUAGCAAUAUUAUUUUAUAUGAUAUGCACAUACGGCCAAAUGAGCAAUACGUGCCAAUGUGCGUUGUCAU_G_CUCUC_AC_UGCGA_UCGC_____GCGAUUCUCAUUGUGCGGCUAA ..((((.(((((((.....)))))))(((((.........((((.((..(((..(....)..)))))))))..................((((.....)))).......))))).)))). (-21.44 = -22.16 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:05 2006